INFO: No output directory specified (--dir)
INFO: Using directory: "Test_shells_20261027_033202"
INFO: Regenerating c-file: Test_shells.c
DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace  -t -o ./Test_shells.c Test_shells.instr --verbose
mcxtrace version 3.99.99
Analyzing file            Test_shells.instr
Embedding component Progress_bar from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/misc/Progress_bar.comp
Component[1]: Origin = Progress_bar().
Embedding library   read_table-lib.h
Embedding library   read_table-lib.c
Embedding component Source_div from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/sources/Source_div.comp
Component[2]: src = Source_div().
Embedding component PSD_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/PSD_monitor.comp
Component[3]: detector_pre_optics = PSD_monitor().
Embedding component Arm from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Arm.comp
Component[4]: optics_centre = Arm().
Embedding component Shell_p from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/astrox/Shell_p.comp
Component[5]: Shell_p_1 = Shell_p().
Embedding component Shell_h from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/astrox/Shell_h.comp
Component[6]: Shell_h_1 = Shell_h().
Embedding component Shell_c from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/astrox/Shell_c.comp
Component[7]: shell_c_1 = Shell_c().
Component[8]: filter = Arm().
Component[9]: detector_post_optics = PSD_monitor().
Embedding library   monitor_nd-lib.h
Embedding library   monitor_nd-lib.c
Embedding library   interoff-lib.h
Embedding library   interoff-lib.c
Embedding component Monitor_nD from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/Monitor_nD.comp
Component[10]: FLmond = Monitor_nD().
Combine metadata blocks into table
Processed 0 metadata blocks
Creating instrument 'Test_shells' (with 10 component instances)
Starting to create C code ./Test_shells.c
Embedding file      mccode-r.h (user path)
Embedding file      mcxtrace-r.h (user path)
Compile            './Test_shells.c -DUSE_NEXUS -lNeXus' to enable NeXus support
Embedding file      mccode-r.c (user path)
Embedding file      mcxtrace-r.c (user path)
Writing instrument 'Test_shells' and components DECLARE
Writing instrument 'Test_shells' and components INITIALISE
Writing components TRACE
Writing instrument 'Test_shells' and components SAVE
Writing instrument 'Test_shells' and components FINALLY
Writing instrument 'Test_shells' and components DISPLAY
Embedding file      metadata-r.c (user path)
Embedding file      mccode_main.c (user path)
Warning: The build of the instrument 'Test_shells' has 36 warnings/errors.
Generated          C code ./Test_shells.c from Test_shells.instr
CFLAGS=

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Generating single GPU kernel or single CPU section layout: 

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Generating GPU/CPU -DFUNNEL layout:

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DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace  finished
INFO: Recompiling: ./Test_shells.out
DEBUG: CMD: mpicc -o ./Test_shells.out ./Test_shells.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -Wl,-rpath-link,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -DUSE_MPI -lmpi -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -O2 -g -DNDEBUG -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -fno-PIC -fPIE -flto -O3 -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm
lto-wrapper: warning: using serial compilation of 3 LTRANS jobs
lto-wrapper: note: see the '-flto' option documentation for more information
DEBUG: CMD: mpicc finished
INFO: ===