INFO: No output directory specified (--dir) INFO: Using directory: "Test_SAXS_20261027_034446" INFO: Regenerating c-file: Test_SAXS.c DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace -t -o ./Test_SAXS.c Test_SAXS.instr --verbose mcxtrace version 3.99.99 Analyzing file Test_SAXS.instr Embedding component Progress_bar from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/misc/Progress_bar.comp Component[1]: Origin = Progress_bar(). Embedding library read_table-lib.h Embedding library read_table-lib.c Embedding component Source_flat from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/sources/Source_flat.comp Component[2]: Source = Source_flat(). Embedding component Slit from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Slit.comp Component[3]: FirstPinhole = Slit(). Component[4]: SecondPinhole = Slit(). Embedding component Arm from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Arm.comp Component[5]: SamplePos = Arm(). Info: 'SAXSSpheres' is a contributed component. Embedding component SAXSSpheres from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSSpheres.comp Component[6]: Sample0 = SAXSSpheres(). Info: 'SAXSShells' is a contributed component. Embedding component SAXSShells from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSShells.comp Component[7]: Sample1 = SAXSShells(). Info: 'SAXSCylinders' is a contributed component. Embedding component SAXSCylinders from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSCylinders.comp Component[8]: Sample2 = SAXSCylinders(). Info: 'SAXSEllipticCylinders' is a contributed component. Embedding component SAXSEllipticCylinders from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSEllipticCylinders.comp Component[9]: Sample3 = SAXSEllipticCylinders(). Info: 'SAXSLiposomes' is a contributed component. Embedding component SAXSLiposomes from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSLiposomes.comp Component[10]: Sample4 = SAXSLiposomes(). Info: 'SAXSNanodiscs' is a contributed component. Embedding component SAXSNanodiscs from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSNanodiscs.comp Component[11]: Sample5 = SAXSNanodiscs(). Info: 'SAXSNanodiscsWithTags' is a contributed component. Embedding component SAXSNanodiscsWithTags from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSNanodiscsWithTags.comp Component[12]: Sample6 = SAXSNanodiscsWithTags(). Info: 'SAXSPDB' is a contributed component. Info: 'SAXSPDBFast' is a contributed component. Embedding library mccode-complex-lib.h Embedding library mccode-complex-lib.c Embedding component SAXSPDBFast from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSPDBFast.comp Embedding component SAXSPDB from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSPDB.comp Component[13]: Sample7 = SAXSPDB(). Info: 'SAXSNanodiscsFast' is a contributed component. Embedding component SAXSNanodiscsFast from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSNanodiscsFast.comp Component[14]: Sample9 = SAXSNanodiscsFast(). Info: 'SAXSNanodiscsWithTagsFast' is a contributed component. Embedding component SAXSNanodiscsWithTagsFast from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSNanodiscsWithTagsFast.comp Component[15]: Sample10 = SAXSNanodiscsWithTagsFast(). Component[16]: Sample11 = SAXSPDBFast(). Embedding component Beamstop from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Beamstop.comp Component[17]: Beamstop = Beamstop(). Embedding component PSD_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/PSD_monitor.comp Component[18]: PSDMonitor = PSD_monitor(). Info: 'SAXSQMonitor' is a contributed component. Embedding component SAXSQMonitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/SAXSQMonitor.comp Component[19]: QMonitor = SAXSQMonitor(). Combine metadata blocks into table Processed 0 metadata blocks Creating instrument 'Test_SAXS' (with 19 component instances) Starting to create C code ./Test_SAXS.c Embedding file mccode-r.h (user path) Embedding file mcxtrace-r.h (user path) Compile './Test_SAXS.c -DUSE_NEXUS -lNeXus' to enable NeXus support Embedding file mccode-r.c (user path) Embedding file mcxtrace-r.c (user path) Writing instrument 'Test_SAXS' and components DECLARE Writing instrument 'Test_SAXS' and components INITIALISE Writing components TRACE Writing instrument 'Test_SAXS' and components SAVE Writing instrument 'Test_SAXS' and components FINALLY Writing instrument 'Test_SAXS' and components DISPLAY Embedding file metadata-r.c (user path) Embedding file mccode_main.c (user path) Warning: The build of the instrument 'Test_SAXS' has 62 warnings/errors. Generated C code ./Test_SAXS.c from Test_SAXS.instr CFLAGS= @GSLFLAGS@ -DFUNNEL ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: Component Sample2 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample2 Component Sample3 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Sample4 Component Sample5 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample5 Component Sample6 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample7 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample9 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample10 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample11 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Beamstop ----------------------------------------------------------- DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace finished INFO: Recompiling: ./Test_SAXS.out DEBUG: CMD: mpicc -o ./Test_SAXS.out ./Test_SAXS.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -Wl,-rpath-link,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -DUSE_MPI -lmpi -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -O2 -g -DNDEBUG -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -fno-PIC -fPIE -flto -O3 -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -lgsl -lgslcblas -DFUNNEL lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information DEBUG: CMD: mpicc finished INFO: ===