INFO: No output directory specified (--dir) INFO: Using directory: "Test_Mono_20261027_034300" INFO: Regenerating c-file: Test_Mono.c DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace -t -o ./Test_Mono.c Test_Mono.instr --verbose mcxtrace version 3.99.99 Analyzing file Test_Mono.instr Embedding component Progress_bar from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/misc/Progress_bar.comp Component[1]: Origin = Progress_bar(). Embedding library read_table-lib.h Embedding library read_table-lib.c Embedding component Source_flat from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/sources/Source_flat.comp Component[2]: generic_source = Source_flat(). Embedding component PSD_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/PSD_monitor.comp Component[3]: psd_pre = PSD_monitor(). Embedding component E_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/E_monitor.comp Component[4]: emon_pre = E_monitor(). Embedding component Arm from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Arm.comp Component[5]: Mono_Arm = Arm(). Warning: 'Perfect_crystal' is an obsolete component (not maintained). Embedding library mccode-complex-lib.h Embedding library mccode-complex-lib.c Embedding component Perfect_crystal from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/obsolete/Perfect_crystal.comp Component[6]: Mono_obso = Perfect_crystal(). Embedding library perfect_crystals-lib.h Embedding library perfect_crystals-lib.c Embedding component Bragg_crystal from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Bragg_crystal.comp Component[7]: Mono1 = Bragg_crystal(). Embedding component Bragg_crystal_bent from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Bragg_crystal_bent.comp Component[8]: Mono1b = Bragg_crystal_bent(). Info: 'Bragg_crystal_BC' is a contributed component. Embedding component Bragg_crystal_BC from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/Bragg_crystal_BC.comp Component[9]: MonoBC = Bragg_crystal_BC(). Info: 'Bragg_crystal_bent_BC' is a contributed component. Embedding component Bragg_crystal_bent_BC from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/Bragg_crystal_bent_BC.comp Component[10]: MonoBCb = Bragg_crystal_bent_BC(). Info: 'Bragg_crystal_simple' is a contributed component. Embedding component Bragg_crystal_simple from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/Bragg_crystal_simple.comp Component[11]: MonoBCs = Bragg_crystal_simple(). Embedding library interoff-lib.h Embedding library interoff-lib.c Embedding component Single_crystal from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/samples/Single_crystal.comp Component[12]: MonoBCsx = Single_crystal(). Component[13]: Mono_Out = Arm(). Embedding component PSD_monitor_4PI from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/PSD_monitor_4PI.comp Component[14]: fpi = PSD_monitor_4PI(). Component[15]: psd1 = PSD_monitor(). Component[16]: emon = E_monitor(). Component[17]: emon_zm = E_monitor(). Combine metadata blocks into table Processed 0 metadata blocks Creating instrument 'Test_Mono' (with 17 component instances) Starting to create C code ./Test_Mono.c Embedding file mccode-r.h (user path) Embedding file mcxtrace-r.h (user path) Compile './Test_Mono.c -DUSE_NEXUS -lNeXus' to enable NeXus support Embedding file mccode-r.c (user path) Embedding file mcxtrace-r.c (user path) Writing instrument 'Test_Mono' and components DECLARE Writing instrument 'Test_Mono' and components INITIALISE Writing components TRACE Writing instrument 'Test_Mono' and components SAVE Writing instrument 'Test_Mono' and components FINALLY Writing instrument 'Test_Mono' and components DISPLAY Embedding file metadata-r.c (user path) Embedding file mccode_main.c (user path) Warning: The build of the instrument 'Test_Mono' has 60 warnings/errors. Generated C code ./Test_Mono.c from Test_Mono.instr CFLAGS= -std=c99 ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: ----------------------------------------------------------- DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace finished INFO: Recompiling: ./Test_Mono.out DEBUG: CMD: mpicc -o ./Test_Mono.out ./Test_Mono.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -Wl,-rpath-link,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -DUSE_MPI -lmpi -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -O2 -g -DNDEBUG -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -fno-PIC -fPIE -flto -O3 -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -std=c99 lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/../libexec/gcc/x86_64-conda-linux-gnu/14.3.0/ld: /tmp/ccbqWfsq.ltrans0.ltrans.o: in function `read_hkl_data.constprop.0': /u/data/pkwi/xTESTS/2026-10-27/mcxtrace-3.99.99_mpi_x_20_1e7_Linux_20261027_0330_30/Test_Mono/./Test_Mono.c:12625:(.text.read_hkl_data.constprop.0+0x177): warning: the use of `tmpnam' is dangerous, better use `mkstemp' DEBUG: CMD: mpicc finished INFO: ===