INFO: No output directory specified (--dir) INFO: Using directory: "SOLEIL_GALAXIES_20261027_033730" INFO: Regenerating c-file: SOLEIL_GALAXIES.c DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace -t -o ./SOLEIL_GALAXIES.c SOLEIL_GALAXIES.instr --verbose mcxtrace version 3.99.99 Analyzing file SOLEIL_GALAXIES.instr Embedding component Progress_bar from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/misc/Progress_bar.comp Component[1]: origin = Progress_bar(). Embedding component Undulator from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/sources/Undulator.comp Component[2]: GALAXIES_Source_U20 = Undulator(). Embedding library monitor_nd-lib.h Embedding library monitor_nd-lib.c Embedding library read_table-lib.h Embedding library read_table-lib.c Embedding library interoff-lib.h Embedding library interoff-lib.c Embedding component Monitor_nD from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/Monitor_nD.comp Component[3]: GALAXIES_mon_src_xy = Monitor_nD(). Component[4]: GALAXIES_mon_src_e = Monitor_nD(). Embedding component Slit from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Slit.comp Component[5]: GALAXIES_absorber = Slit(). Component[6]: GALAXIES_diaphragme = Slit(). Component[7]: GALAXIES_fentes_primaires = Slit(). Component[8]: GALAXIES_mon_prim_xy = Monitor_nD(). Embedding component Arm from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Arm.comp Component[9]: GALAXIES_DCM_location = Arm(). Embedding library perfect_crystals-lib.h Embedding library mccode-complex-lib.h Embedding library mccode-complex-lib.c Embedding library perfect_crystals-lib.c Embedding component Bragg_crystal from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Bragg_crystal.comp Component[10]: GALAXIES_dcm_xtal0 = Bragg_crystal(). Component[11]: GALAXIES_dcm0 = Arm(). Component[12]: GALAXIES_dcm_xtal1 = Bragg_crystal(). Component[13]: GALAXIES_dcm1 = Arm(). Component[14]: GALAXIES_mon_dcm_e = Monitor_nD(). Component[15]: GALAXIES_mon_dcm_xy = Monitor_nD(). Component[16]: GALAXIES_M1_location = Arm(). Component[17]: GALAXIES_M1_rotated = Arm(). Embedding library reflectivity-lib.h Embedding library reflectivity-lib.c Embedding component Mirror_curved from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Mirror_curved.comp Component[18]: GALAXIES_M1 = Mirror_curved(). Component[19]: GALAXIES_M1_out = Arm(). Component[20]: GALAXIES_HRM_gate_in = Slit(). Component[21]: GALAXIES_M2A_location = Arm(). Component[22]: GALAXIES_M2A_rotated = Arm(). Embedding component Mirror_toroid from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Mirror_toroid.comp Component[23]: GALAXIES_M2A = Mirror_toroid(). Component[24]: GALAXIES_M2A_out = Arm(). Component[25]: GALAXIES_secondary_slits = Slit(). Component[26]: GALAXIES_mon_sec_xy = Monitor_nD(). Component[27]: GALAXIES_M2B_location = Arm(). Component[28]: GALAXIES_M2B_rotated = Arm(). Component[29]: GALAXIES_M2B = Mirror_toroid(). Component[30]: GALAXIES_M2B_out = Arm(). Component[31]: GALAXIES_VFM_location = Arm(). Component[32]: GALAXIES_VFM_rotated = Arm(). Component[33]: GALAXIES_VFM = Mirror_curved(). Component[34]: GALAXIES_VFM_out = Arm(). Component[35]: GALAXIES_HFM_rotated = Arm(). Component[36]: GALAXIES_HFM = Mirror_curved(). Component[37]: GALAXIES_HFM_out = Arm(). Component[38]: GALAXIES_mon_sample_xy_kb = Monitor_nD(). Component[39]: GALAXIES_mon_sample_e = Monitor_nD(). Component[40]: GALAXIES_sample_stage = Arm(). Embedding component Fluorescence from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/samples/Fluorescence.comp Embedding component Single_crystal from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/samples/Single_crystal.comp Embedding component FluoCrystal from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/samples/FluoCrystal.comp Component[41]: GALAXIES_sample = FluoCrystal(). Component[42]: GALAXIES_sample_out = Arm(). Component[43]: GALAXIES_ana_arm = Arm(). Component[44]: GALAXIES_analyzer = Bragg_crystal(). Component[45]: GALAXIES_ana_out = Arm(). Component[46]: GALAXIES_IXS_det = Monitor_nD(). Combine metadata blocks into table Processed 0 metadata blocks Creating instrument 'SOLEIL_GALAXIES' (with 46 component instances) Starting to create C code ./SOLEIL_GALAXIES.c Embedding file mccode-r.h (user path) Embedding file mcxtrace-r.h (user path) Compile './SOLEIL_GALAXIES.c -DUSE_NEXUS -lNeXus' to enable NeXus support Embedding file mccode-r.c (user path) Embedding file mcxtrace-r.c (user path) Writing instrument 'SOLEIL_GALAXIES' and components DECLARE Writing instrument 'SOLEIL_GALAXIES' and components INITIALISE Writing components TRACE Writing instrument 'SOLEIL_GALAXIES' and components SAVE Writing instrument 'SOLEIL_GALAXIES' and components FINALLY Writing instrument 'SOLEIL_GALAXIES' and components DISPLAY Embedding file metadata-r.c (user path) Embedding file mccode_main.c (user path) Warning: The build of the instrument 'SOLEIL_GALAXIES' has 139 warnings/errors. Generated C code ./SOLEIL_GALAXIES.c from SOLEIL_GALAXIES.instr CFLAGS= @GSLFLAGS@ -DFUNNEL -std=c99 @XRLFLAGS@ -DUSE_OFF ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: -> SPLIT N at component GALAXIES_sample ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: Component GALAXIES_Source_U20 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component GALAXIES_Source_U20 -> GPU kernel from component GALAXIES_mon_src_xy Component GALAXIES_sample is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> SPLIT within buffer at component GALAXIES_sample -> GPU kernel from component GALAXIES_sample_out ----------------------------------------------------------- DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace finished INFO: Recompiling: ./SOLEIL_GALAXIES.out DEBUG: CMD: mpicc -o ./SOLEIL_GALAXIES.out ./SOLEIL_GALAXIES.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -Wl,-rpath-link,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -DUSE_MPI -lmpi -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -O2 -g -DNDEBUG -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -fno-PIC -fPIE -flto -O3 -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -lgsl -lgslcblas -DFUNNEL -std=c99 -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -lxrl -DUSE_OFF ./SOLEIL_GALAXIES.c: In function 'reflec_Init': ./SOLEIL_GALAXIES.c:14718:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 14718 | int N=(unsigned int)((double **) pars)[0]; | ^ lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/../libexec/gcc/x86_64-conda-linux-gnu/14.3.0/ld: /tmp/ccS3Oat3.ltrans1.ltrans.o: in function `class_FluoCrystal_init.constprop.0.isra.0': /u/data/pkwi/xTESTS/2026-10-27/mcxtrace-3.99.99_mpi_x_20_1e7_Linux_20261027_0330_30/SOLEIL_GALAXIES/./SOLEIL_GALAXIES.c:15450:(.text.class_FluoCrystal_init.constprop.0.isra.0+0xf40): warning: the use of `tmpnam' is dangerous, better use `mkstemp' DEBUG: CMD: mpicc finished INFO: ===