INFO: No output directory specified (--dir) INFO: Using directory: "SOLEIL_CRISTAL_20261027_033700" INFO: Regenerating c-file: SOLEIL_CRISTAL.c DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace -t -o ./SOLEIL_CRISTAL.c SOLEIL_CRISTAL.instr --verbose mcxtrace version 3.99.99 Analyzing file SOLEIL_CRISTAL.instr Embedding component Progress_bar from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/misc/Progress_bar.comp Component[1]: CRISTAL_origin = Progress_bar(). Embedding component Undulator from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/sources/Undulator.comp Component[2]: CRISTAL_Source = Undulator(). Embedding component Slit from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Slit.comp Component[3]: CRISTAL_slit1 = Slit(). Embedding component Arm from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Arm.comp Component[4]: CRISTAL_dcm_location = Arm(). Embedding library perfect_crystals-lib.h Embedding library mccode-complex-lib.h Embedding library mccode-complex-lib.c Embedding library read_table-lib.h Embedding library read_table-lib.c Embedding library perfect_crystals-lib.c Embedding component Bragg_crystal from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Bragg_crystal.comp Component[5]: CRISTAL_dcm_xtal0 = Bragg_crystal(). Component[6]: CRISTAL_arm_xtal0 = Arm(). Component[7]: CRISTAL_dcm_xtal1 = Bragg_crystal(). Component[8]: CRISTAL_arm_xtal1 = Arm(). Embedding component E_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/E_monitor.comp Component[9]: CRISTAL_emon_dcm = E_monitor(). Component[10]: CRISTAL_M1_location = Arm(). Component[11]: CRISTAL_M1_rotated = Arm(). Embedding library reflectivity-lib.h Embedding library reflectivity-lib.c Embedding component Mirror_curved from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Mirror_curved.comp Component[12]: CRISTAL_M1 = Mirror_curved(). Component[13]: CRISTAL_M1_out = Arm(). Component[14]: CRISTAL_M2_location = Arm(). Component[15]: CRISTAL_M2_rotated = Arm(). Component[16]: CRISTAL_M2 = Mirror_curved(). Component[17]: CRISTAL_M2_out = Arm(). Component[18]: CRISTAL_slit2 = Slit(). Embedding component PSD_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/PSD_monitor.comp Component[19]: CRISTAL_psd_slit2 = PSD_monitor(). Component[20]: CRISTAL_sample_stage = Arm(). Embedding library interoff-lib.h Embedding library interoff-lib.c Embedding component Fluorescence from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/samples/Fluorescence.comp Embedding component PowderN from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/samples/PowderN.comp Embedding component FluoPowder from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/samples/FluoPowder.comp Component[21]: CRISTAL_fluo = FluoPowder(). Embedding library monitor_nd-lib.h Embedding library monitor_nd-lib.c Embedding component Monitor_nD from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/Monitor_nD.comp Component[22]: CRISTAL_detector_diffraction = Monitor_nD(). Component[23]: CRISTAL_detector_fluo = Monitor_nD(). Combine metadata blocks into table Processed 0 metadata blocks Creating instrument 'SOLEIL_CRISTAL' (with 23 component instances) Starting to create C code ./SOLEIL_CRISTAL.c Embedding file mccode-r.h (user path) Embedding file mcxtrace-r.h (user path) Compile './SOLEIL_CRISTAL.c -DUSE_NEXUS -lNeXus' to enable NeXus support Embedding file mccode-r.c (user path) Embedding file mcxtrace-r.c (user path) Writing instrument 'SOLEIL_CRISTAL' and components DECLARE Writing instrument 'SOLEIL_CRISTAL' and components INITIALISE Writing components TRACE Writing instrument 'SOLEIL_CRISTAL' and components SAVE Writing instrument 'SOLEIL_CRISTAL' and components FINALLY Writing instrument 'SOLEIL_CRISTAL' and components DISPLAY Embedding file metadata-r.c (user path) Embedding file mccode_main.c (user path) Warning: The build of the instrument 'SOLEIL_CRISTAL' has 60 warnings/errors. Generated C code ./SOLEIL_CRISTAL.c from SOLEIL_CRISTAL.instr CFLAGS= @GSLFLAGS@ -DFUNNEL -std=c99 @XRLFLAGS@ -DUSE_OFF ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: -> SPLIT N at component CRISTAL_fluo ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: Component CRISTAL_Source is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component CRISTAL_Source -> GPU kernel from component CRISTAL_slit1 Component CRISTAL_fluo is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> SPLIT within buffer at component CRISTAL_fluo -> GPU kernel from component CRISTAL_detector_diffraction ----------------------------------------------------------- DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace finished INFO: Recompiling: ./SOLEIL_CRISTAL.out DEBUG: CMD: mpicc -o ./SOLEIL_CRISTAL.out ./SOLEIL_CRISTAL.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -Wl,-rpath-link,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -DUSE_MPI -lmpi -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -O2 -g -DNDEBUG -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -fno-PIC -fPIE -flto -O3 -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -lgsl -lgslcblas -DFUNNEL -std=c99 -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -lxrl -DUSE_OFF ./SOLEIL_CRISTAL.c: In function 'reflec_Init': ./SOLEIL_CRISTAL.c:10799:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 10799 | int N=(unsigned int)((double **) pars)[0]; | ^ lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/../libexec/gcc/x86_64-conda-linux-gnu/14.3.0/ld: /tmp/cc6fcefx.ltrans2.ltrans.o: in function `class_FluoPowder_init.constprop.0.isra.0': /u/data/pkwi/xTESTS/2026-10-27/mcxtrace-3.99.99_mpi_x_20_1e7_Linux_20261027_0330_30/SOLEIL_CRISTAL/./SOLEIL_CRISTAL.c:11481:(.text.class_FluoPowder_init.constprop.0.isra.0+0xf12): warning: the use of `tmpnam' is dangerous, better use `mkstemp' DEBUG: CMD: mpicc finished INFO: ===