INFO: No output directory specified (--dir) INFO: Using directory: "SOLEIL_ANATOMIX_20261027_033644" INFO: Regenerating c-file: SOLEIL_ANATOMIX.c DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace -t -o ./SOLEIL_ANATOMIX.c SOLEIL_ANATOMIX.instr --verbose mcxtrace version 3.99.99 Analyzing file SOLEIL_ANATOMIX.instr Embedding component Progress_bar from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/misc/Progress_bar.comp Component[1]: ANATOMIX_origin = Progress_bar(). Embedding component Undulator from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/sources/Undulator.comp Component[2]: ANATOMIX_source = Undulator(). Embedding library monitor_nd-lib.h Embedding library monitor_nd-lib.c Embedding library read_table-lib.h Embedding library read_table-lib.c Embedding library interoff-lib.h Embedding library interoff-lib.c Embedding component Monitor_nD from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/Monitor_nD.comp Component[3]: ANATOMIX_e_repartition_before_cc = Monitor_nD(). Embedding component PSD_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/PSD_monitor.comp Component[4]: ANATOMIX_psd_monitor_before_cc = PSD_monitor(). Embedding library perfect_crystals-lib.h Embedding library mccode-complex-lib.h Embedding library mccode-complex-lib.c Embedding library perfect_crystals-lib.c Embedding component Bragg_crystal from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Bragg_crystal.comp Component[5]: ANATOMIX_bragg_crystal = Bragg_crystal(). Embedding component Arm from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Arm.comp Component[6]: ANATOMIX_arm = Arm(). Component[7]: ANATOMIX_bragg_crystal_two = Bragg_crystal(). Component[8]: ANATOMIX_arm_two = Arm(). Component[9]: ANATOMIX_psd_after_cc = PSD_monitor(). Embedding component E_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/E_monitor.comp Component[10]: ANATOMIX_e_monitor_before_sample = E_monitor(). Component[11]: ANATOMIX_psd_repartition_after_cc = PSD_monitor(). Component[12]: ANATOMIX_sample_rotation_stage = Arm(). Embedding component Filter from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Filter.comp Component[13]: ANATOMIX_sample = Filter(). Component[14]: ANATOMIX_e_monitor_after_sample = E_monitor(). Component[15]: ANATOMIX_psd_monitor_after_cc = PSD_monitor(). Combine metadata blocks into table Processed 0 metadata blocks Creating instrument 'SOLEIL_ANATOMIX' (with 15 component instances) Starting to create C code ./SOLEIL_ANATOMIX.c Embedding file mccode-r.h (user path) Embedding file mcxtrace-r.h (user path) Compile './SOLEIL_ANATOMIX.c -DUSE_NEXUS -lNeXus' to enable NeXus support Embedding file mccode-r.c (user path) Embedding file mcxtrace-r.c (user path) Writing instrument 'SOLEIL_ANATOMIX' and components DECLARE Writing instrument 'SOLEIL_ANATOMIX' and components INITIALISE Writing components TRACE Writing instrument 'SOLEIL_ANATOMIX' and components SAVE Writing instrument 'SOLEIL_ANATOMIX' and components FINALLY Writing instrument 'SOLEIL_ANATOMIX' and components DISPLAY Embedding file metadata-r.c (user path) Embedding file mccode_main.c (user path) Warning: The build of the instrument 'SOLEIL_ANATOMIX' has 55 warnings/errors. Generated C code ./SOLEIL_ANATOMIX.c from SOLEIL_ANATOMIX.instr CFLAGS= @GSLFLAGS@ -DFUNNEL -std=c99 ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: Component ANATOMIX_source is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component ANATOMIX_source -> GPU kernel from component ANATOMIX_e_repartition_before_cc ----------------------------------------------------------- DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace finished INFO: Recompiling: ./SOLEIL_ANATOMIX.out DEBUG: CMD: mpicc -o ./SOLEIL_ANATOMIX.out ./SOLEIL_ANATOMIX.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -Wl,-rpath-link,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -DUSE_MPI -lmpi -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -O2 -g -DNDEBUG -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -fno-PIC -fPIE -flto -O3 -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -lgsl -lgslcblas -DFUNNEL -std=c99 lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information DEBUG: CMD: mpicc finished INFO: ===