INFO: No output directory specified (--dir) INFO: Using directory: "PBD_BT_20261027_033507" INFO: Regenerating c-file: PBD_BT.c DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace -t -o ./PBD_BT.c PBD_BT.instr --verbose mcxtrace version 3.99.99 Analyzing file PBD_BT.instr Embedding component Progress_bar from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/misc/Progress_bar.comp Component[1]: Origin = Progress_bar(). Embedding library read_table-lib.h Embedding library read_table-lib.c Embedding component Source_lab from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/sources/Source_lab.comp Component[2]: PBD_Rigaku = Source_lab(). Embedding component Arm from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Arm.comp Component[3]: mirror_arm = Arm(). Embedding component Mirror_parabolic from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Mirror_parabolic.comp Component[4]: mirror = Mirror_parabolic(). Embedding component PSD_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/PSD_monitor.comp Component[5]: mirror_psd = PSD_monitor(). Component[6]: mirror_arm_exit0 = Arm(). Component[7]: monochromator_arm = Arm(). Info: 'Bragg_crystal_BC' is a contributed component. Embedding library perfect_crystals-lib.h Embedding library mccode-complex-lib.h Embedding library mccode-complex-lib.c Embedding library perfect_crystals-lib.c Embedding component Bragg_crystal_BC from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/contrib/Bragg_crystal_BC.comp Component[8]: mono_silicon_1a = Bragg_crystal_BC(). Embedding component E_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/E_monitor.comp Component[9]: first_crystal_spect = E_monitor(). Component[10]: mono_silicon_1b = Bragg_crystal_BC(). Embedding component Beamstop from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Beamstop.comp Component[11]: mono_block = Beamstop(). Component[12]: mono_silicon_1c = Bragg_crystal_BC(). Component[13]: mono_silicon_1d = Bragg_crystal_BC(). Embedding component Slit from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Slit.comp Component[14]: slit_2 = Slit(). Component[15]: incoming_spectrum_mon = E_monitor(). Component[16]: silicon_1_arm = Arm(). Component[17]: silicon_1_arm_2 = Arm(). Component[18]: crystal_1_front_shadow_1 = Beamstop(). Component[19]: silicon_1a = Bragg_crystal_BC(). Component[20]: silicon_1b = Bragg_crystal_BC(). Component[21]: silicon_1c = Bragg_crystal_BC(). Component[22]: crystal_1_front_shadow_2 = Beamstop(). Component[23]: diffracted_arm = Arm(). Component[24]: crystal_2_arm = Arm(). Component[25]: crystal_2_front_shadow_1 = Beamstop(). Component[26]: silicon_2a = Bragg_crystal_BC(). Component[27]: silicon_2b = Bragg_crystal_BC(). Component[28]: silicon_2c = Bragg_crystal_BC(). Component[29]: crystal_2_front_shadow_2 = Beamstop(). Component[30]: camera_arm = Arm(). Component[31]: spectrum_mon = E_monitor(). Component[32]: camera = PSD_monitor(). Combine metadata blocks into table Processed 0 metadata blocks Creating instrument 'PBD_BT' (with 32 component instances) Starting to create C code ./PBD_BT.c Embedding file mccode-r.h (user path) Embedding file mcxtrace-r.h (user path) Compile './PBD_BT.c -DUSE_NEXUS -lNeXus' to enable NeXus support Embedding file mccode-r.c (user path) Embedding file mcxtrace-r.c (user path) Writing instrument 'PBD_BT' and components DECLARE Writing instrument 'PBD_BT' and components INITIALISE Writing components TRACE Writing instrument 'PBD_BT' and components SAVE Writing instrument 'PBD_BT' and components FINALLY Writing instrument 'PBD_BT' and components DISPLAY Embedding file metadata-r.c (user path) Embedding file mccode_main.c (user path) Warning: The build of the instrument 'PBD_BT' has 89 warnings/errors. Generated C code ./PBD_BT.c from PBD_BT.instr CFLAGS= -std=c99 ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: ----------------------------------------------------------- DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace finished INFO: Recompiling: ./PBD_BT.out DEBUG: CMD: mpicc -o ./PBD_BT.out ./PBD_BT.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -Wl,-rpath-link,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -DUSE_MPI -lmpi -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -O2 -g -DNDEBUG -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -fno-PIC -fPIE -flto -O3 -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -std=c99 lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information DEBUG: CMD: mpicc finished INFO: ===