INFO: No output directory specified (--dir) INFO: Using directory: "JJ_SAXS_20261027_033521" INFO: Regenerating c-file: JJ_SAXS.c DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace -t -o ./JJ_SAXS.c JJ_SAXS.instr --verbose mcxtrace version 3.99.99 Analyzing file JJ_SAXS.instr Embedding component Progress_bar from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/misc/Progress_bar.comp Component[1]: Origin = Progress_bar(). Embedding library read_table-lib.h Embedding library read_table-lib.c Embedding component Source_flat from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/sources/Source_flat.comp Component[2]: apparent_source = Source_flat(). Embedding component PSD_monitor from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/monitors/PSD_monitor.comp Component[3]: psd00 = PSD_monitor(). Embedding component Arm from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Arm.comp Component[4]: optic_arm = Arm(). Embedding library mccode-complex-lib.h Embedding library mccode-complex-lib.c Embedding library reflectivity-lib.h Embedding library reflectivity-lib.c Embedding component Mirror_curved from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Mirror_curved.comp Component[5]: optic = Mirror_curved(). Component[6]: beam_tube_axis = Arm(). Embedding component Slit from file /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/share/mcxtrace/resources/optics/Slit.comp Component[7]: pinhole1 = Slit(). Component[8]: psd01 = PSD_monitor(). Component[9]: pinhole2 = Slit(). Component[10]: pinhole3 = Slit(). Component[11]: psd03 = PSD_monitor(). Component[12]: psd1 = PSD_monitor(). Combine metadata blocks into table Processed 0 metadata blocks Creating instrument 'JJ_SAXS' (with 12 component instances) Starting to create C code ./JJ_SAXS.c Embedding file mccode-r.h (user path) Embedding file mcxtrace-r.h (user path) Compile './JJ_SAXS.c -DUSE_NEXUS -lNeXus' to enable NeXus support Embedding file mccode-r.c (user path) Embedding file mcxtrace-r.c (user path) Writing instrument 'JJ_SAXS' and components DECLARE Writing instrument 'JJ_SAXS' and components INITIALISE Writing components TRACE Writing instrument 'JJ_SAXS' and components SAVE Writing instrument 'JJ_SAXS' and components FINALLY Writing instrument 'JJ_SAXS' and components DISPLAY Embedding file metadata-r.c (user path) Embedding file mccode_main.c (user path) Warning: The build of the instrument 'JJ_SAXS' has 43 warnings/errors. Generated C code ./JJ_SAXS.c from JJ_SAXS.instr CFLAGS= ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: ----------------------------------------------------------- DEBUG: CMD: /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/bin/mcxtrace finished INFO: Recompiling: ./JJ_SAXS.out DEBUG: CMD: mpicc -o ./JJ_SAXS.out ./JJ_SAXS.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -Wl,-rpath-link,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -DUSE_MPI -lmpi -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -O2 -g -DNDEBUG -I/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/include -Wl,-rpath,/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -L/u/data/pkwi/WORK/micromamba/envs/mcxtrace-3.x/lib -fno-PIC -fPIE -flto -O3 -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm ./JJ_SAXS.c: In function 'reflec_Init': ./JJ_SAXS.c:10125:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 10125 | int N=(unsigned int)((double **) pars)[0]; | ^ lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information DEBUG: CMD: mpicc finished INFO: ===