INFO: No output directory specified (--dir)
INFO: Using directory: "Test_capillary_20241024_061552"
INFO: Regenerating c-file: Test_capillary.c
DEBUG: CMD: /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/bin/mcxtrace -t -o ./Test_capillary.c Test_capillary.instr
CFLAGS=
  
-----------------------------------------------------------

Generating single GPU kernel or single CPU section layout: 

-----------------------------------------------------------

Generating GPU/CPU -DFUNNEL layout:

-----------------------------------------------------------
DEBUG: CMD: /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/bin/mcxtrace finished
INFO: Recompiling: ./Test_capillary.out
DEBUG: CMD: nvc -o ./Test_capillary.out ./Test_capillary.c -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -Wl,-rpath-link,/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -L/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -mtune=haswell -fPIC -O2 -isystem /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include -fast -Minfo=accel -acc=gpu -gpu=managed -DOPENACC
"./Test_capillary.c", line 4483: warning: variable "num" was declared but never referenced [declared_but_not_referenced]
          int num = 3;
              ^

Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>"

"./Test_capillary.c", line 6606: warning: variable "ret" was declared but never referenced [declared_but_not_referenced]
    int ret=1,stat=0,plane_stat=0;
        ^

"./Test_capillary.c", line 6779: warning: variable "D" was declared but never referenced [declared_but_not_referenced]
    double A,B,C,D,k;
                 ^

"/usr/include/math.h", line 30: warning: #warning directive: A macro called log was already defined when <math.h> was included. [warning_directive]
  # warning A macro called log was already defined when <math.h> was included.
    ^

"/usr/include/math.h", line 31: warning: #warning directive: This will cause compilation problems. [warning_directive]
  # warning This will cause compilation problems.
    ^

"./Test_capillary.c", line 8819: warning: variable "tc2" was set but never used [set_but_not_used]
      Coords tc1, tc2;
                  ^

"./Test_capillary.c", line 8807: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 1;
        ^

"./Test_capillary.c", line 8860: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 2;
        ^

"./Test_capillary.c", line 8931: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 3;
        ^

"./Test_capillary.c", line 8994: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 4;
        ^

"./Test_capillary.c", line 9055: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 5;
        ^

"./Test_capillary.c", line 9116: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 6;
        ^

"./Test_capillary.c", line 9165: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 7;
        ^

"./Test_capillary.c", line 9228: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 8;
        ^

"./Test_capillary.c", line 9291: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 9;
        ^

"./Test_capillary.c", line 9354: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 10;
        ^

"./Test_capillary.c", line 9417: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 11;
        ^

"./Test_capillary.c", line 9480: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 12;
        ^

"./Test_capillary.c", line 9543: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 13;
        ^

"./Test_capillary.c", line 9606: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 14;
        ^

"./Test_capillary.c", line 9669: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 15;
        ^

"./Test_capillary.c", line 9732: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 16;
        ^

"./Test_capillary.c", line 9795: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 17;
        ^

"./Test_capillary.c", line 9858: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 18;
        ^

"./Test_capillary.c", line 9921: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 19;
        ^

"./Test_capillary.c", line 9982: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 20;
        ^

"./Test_capillary.c", line 10135: warning: variable "status" was set but never used [set_but_not_used]
      int status=0;
          ^

"./Test_capillary.c", line 10205: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i,j;
          ^

"./Test_capillary.c", line 10205: warning: variable "j" was declared but never referenced [declared_but_not_referenced]
      int i,j;
            ^

"./Test_capillary.c", line 10206: warning: variable "p1" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
              ^

"./Test_capillary.c", line 10206: warning: variable "p2" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                  ^

"./Test_capillary.c", line 10206: warning: variable "p3" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                      ^

"./Test_capillary.c", line 10264: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i;
          ^

"./Test_capillary.c", line 10321: warning: variable "status" was set but never used [set_but_not_used]
    int status;
        ^

"./Test_capillary.c", line 10774: warning: variable "k" was declared but never referenced [declared_but_not_referenced]
      int i,j,k;
              ^

"./Test_capillary.c", line 10775: warning: variable "e" was declared but never referenced [declared_but_not_referenced]
      double e,p2;
             ^

"./Test_capillary.c", line 11005: warning: variable "delta" was declared but never referenced [declared_but_not_referenced]
                  double Qc,Q,f1,f2,delta,beta,na,e,k2;
                                    ^

"./Test_capillary.c", line 11005: warning: variable "beta" was declared but never referenced [declared_but_not_referenced]
                  double Qc,Q,f1,f2,delta,beta,na,e,k2;
                                          ^

"./Test_capillary.c", line 11005: warning: variable "k2" was declared but never referenced [declared_but_not_referenced]
                  double Qc,Q,f1,f2,delta,beta,na,e,k2;
                                                    ^

"./Test_capillary.c", line 10942: warning: variable "dl" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                   ^

"./Test_capillary.c", line 10942: warning: variable "alpha" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                      ^

"./Test_capillary.c", line 10942: warning: variable "n" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                            ^

"./Test_capillary.c", line 10942: warning: variable "knx" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                                           ^

"./Test_capillary.c", line 10942: warning: variable "knz" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                                               ^

"./Test_capillary.c", line 12949: warning: variable "t" was declared but never referenced [declared_but_not_referenced]
    time_t  t;
            ^

"./Test_capillary.c", line 12950: warning: variable "ct" was set but never used [set_but_not_used]
    clock_t ct;
            ^

"./Test_capillary.c", line 1492: warning: variable "mcstartdate" was set but never used [set_but_not_used]
  static   long mcstartdate            = 0; /* start simulation time */
                ^

"./Test_capillary.c", line 2895: warning: function "strcpy_valid" was declared but never referenced [declared_but_not_referenced]
  static char *strcpy_valid(char *valid, char *original)
               ^

mcgenstate:
     86, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar:
    100, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar_void:
    134, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void:
    160, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void_array:
    184, Generating acc routine seq
         Generating NVIDIA GPU code
particle_restore:
    195, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getuservar_byid:
    204, Generating acc routine seq
         Generating NVIDIA GPU code
particle_uservar_init:
    215, Generating acc routine seq
         Generating NVIDIA GPU code
noprintf:
   1539, Generating acc routine seq
         Generating NVIDIA GPU code
str_comp:
   1543, Generating acc routine seq
         Generating NVIDIA GPU code
str_len:
   1552, Generating acc routine seq
         Generating NVIDIA GPU code
mcget_ncount:
   4104, Generating acc routine seq
         Generating NVIDIA GPU code
coords_set:
   4535, Generating acc routine seq
         Generating NVIDIA GPU code
coords_get:
   4546, Generating acc routine seq
         Generating NVIDIA GPU code
coords_add:
   4555, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sub:
   4567, Generating acc routine seq
         Generating NVIDIA GPU code
coords_neg:
   4579, Generating acc routine seq
         Generating NVIDIA GPU code
coords_scale:
   4589, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sp:
   4599, Generating acc routine seq
         Generating NVIDIA GPU code
coords_xp:
   4607, Generating acc routine seq
         Generating NVIDIA GPU code
coords_len:
   4617, Generating acc routine seq
         Generating NVIDIA GPU code
coords_print:
   4639, Generating acc routine seq
         Generating NVIDIA GPU code
coords_norm:
   4646, Generating acc routine seq
         Generating NVIDIA GPU code
rot_set_rotation:
   4692, Generating acc routine seq
         Generating NVIDIA GPU code
rot_test_identity:
   4727, Generating acc routine seq
         Generating NVIDIA GPU code
rot_mul:
   4738, Generating acc routine seq
         Generating NVIDIA GPU code
rot_copy:
   4755, Generating acc routine seq
         Generating NVIDIA GPU code
rot_transpose:
   4766, Generating acc routine seq
         Generating NVIDIA GPU code
rot_apply:
   4782, Generating acc routine seq
         Generating NVIDIA GPU code
vec_prod_func:
   4811, Generating acc routine seq
         Generating NVIDIA GPU code
scalar_prod:
   4822, Generating acc routine seq
         Generating NVIDIA GPU code
norm_func:
   4826, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange:
   5003, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange_polarisation:
   5034, Generating acc routine seq
         Generating NVIDIA GPU code
normal_vec:
   5051, Generating acc routine seq
         Generating NVIDIA GPU code
solve_2nd_order:
   5150, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_circle:
   5234, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_angular:
   5300, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_real:
   5377, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_srandom:
   5649, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_random:
   5659, Generating acc routine seq
         Generating NVIDIA GPU code
_hash:
   5685, Generating acc routine seq
         Generating NVIDIA GPU code
_randnorm2:
   5726, Generating acc routine seq
         Generating NVIDIA GPU code
_randtriangle:
   5737, Generating acc routine seq
         Generating NVIDIA GPU code
_rand01:
   5742, Generating acc routine seq
         Generating NVIDIA GPU code
_randpm1:
   5750, Generating acc routine seq
         Generating NVIDIA GPU code
_rand0max:
   5758, Generating acc routine seq
         Generating NVIDIA GPU code
_randminmax:
   5765, Generating acc routine seq
         Generating NVIDIA GPU code
mcsetstate:
   6407, Generating acc routine seq
         Generating NVIDIA GPU code
mcgetstate:
   6440, Generating acc routine seq
         Generating NVIDIA GPU code
inside_rectangle:
   6501, Generating acc routine seq
         Generating NVIDIA GPU code
box_intersect:
   6517, Generating acc routine seq
         Generating NVIDIA GPU code
cylinder_intersect:
   6603, Generating acc routine seq
         Generating NVIDIA GPU code
sphere_intersect:
   6671, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Index:
   7814, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value:
   7882, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value2d:
   7961, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d:
   8429, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d_nearest:
   8445, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp2d:
   8463, Generating acc routine seq
         Generating NVIDIA GPU code
init:
  10476, Generating update device(_emon_zm_var,_psd1_var,_Origin_var,_tube_var,_tube_out_var,_psd_pre_var,_psd04_var,_instrument_var,_psd00_var,_psd01_var,_psd02_var,_psd03_var,_psd14_var,_psd0_var,_psd10_var,_psd11_var,_psd12_var,_psd13_var,_emon_pre_var,_emon_var,_generic_source_var)
class_Progress_bar_trace:
  10519, Generating acc routine seq
         Generating NVIDIA GPU code
class_Source_flat_trace:
  10617, Generating acc routine seq
         Generating NVIDIA GPU code
class_PSD_monitor_trace:
  10754, Generating acc routine seq
         Generating NVIDIA GPU code
class_E_monitor_trace:
  10845, Generating acc routine seq
         Generating NVIDIA GPU code
class_Capillary_trace:
  10920, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace:
  11111, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace_all:
  11581, Generating implicit firstprivate(gpu_innerloop)
         Generating NVIDIA GPU code
      11592, #pragma acc loop gang(numgangs), vector(vecsize) /* blockIdx.x threadIdx.x */
  11581, Local memory used for .inl_particle_17613,particleN,.inl_.inl_mcphoton_0_17629,.inl_.X1876_17631,.inl_.inl_.X2073_13_17630
  11592, Generating implicit firstprivate(seed,_particle)
finally:
  12349, Generating update self(_emon_zm_var,_psd1_var,_Origin_var,_tube_var,_tube_out_var,_psd_pre_var,_psd04_var,_instrument_var,_psd00_var,_psd01_var,_psd02_var,_psd03_var,_psd14_var,_psd0_var,_psd10_var,_psd11_var,_psd12_var,_psd13_var,_emon_pre_var,_emon_var,_generic_source_var)
mcenabletrace:
   5884, Generating update device(mcdotrace)
/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/tools/../miniconda3/bin//ld: warning: /tmp/pgcudafatzQcWlY01nwoe.o: missing .note.GNU-stack section implies executable stack
/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/tools/../miniconda3/bin//ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker
DEBUG: CMD: nvc finished
INFO: ===