INFO: No output directory specified (--dir)
INFO: Using directory: "Test_Saxs_spheres_20241024_062111"
INFO: Regenerating c-file: Test_Saxs_spheres.c
DEBUG: CMD: /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/bin/mcxtrace -t -o ./Test_Saxs_spheres.c Test_Saxs_spheres.instr
CFLAGS=
  
-----------------------------------------------------------

Generating single GPU kernel or single CPU section layout: 

-----------------------------------------------------------

Generating GPU/CPU -DFUNNEL layout:

-----------------------------------------------------------
DEBUG: CMD: /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/bin/mcxtrace finished
INFO: Recompiling: ./Test_Saxs_spheres.out
DEBUG: CMD: nvc -o ./Test_Saxs_spheres.out ./Test_Saxs_spheres.c -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -Wl,-rpath-link,/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -L/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -mtune=haswell -fPIC -O2 -isystem /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include -fast -Minfo=accel -acc=gpu -gpu=managed -DOPENACC
"./Test_Saxs_spheres.c", line 4476: warning: variable "num" was declared but never referenced [declared_but_not_referenced]
          int num = 3;
              ^

Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>"

"./Test_Saxs_spheres.c", line 6599: warning: variable "ret" was declared but never referenced [declared_but_not_referenced]
    int ret=1,stat=0,plane_stat=0;
        ^

"./Test_Saxs_spheres.c", line 6772: warning: variable "D" was declared but never referenced [declared_but_not_referenced]
    double A,B,C,D,k;
                 ^

"./Test_Saxs_spheres.c", line 8745: warning: variable "tc2" was set but never used [set_but_not_used]
      Coords tc1, tc2;
                  ^

"./Test_Saxs_spheres.c", line 8733: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 1;
        ^

"./Test_Saxs_spheres.c", line 8786: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 2;
        ^

"./Test_Saxs_spheres.c", line 8857: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 3;
        ^

"./Test_Saxs_spheres.c", line 8920: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 4;
        ^

"./Test_Saxs_spheres.c", line 8992: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 5;
        ^

"./Test_Saxs_spheres.c", line 9051: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 6;
        ^

"./Test_Saxs_spheres.c", line 9114: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 7;
        ^

"./Test_Saxs_spheres.c", line 9269: warning: variable "status" was set but never used [set_but_not_used]
      int status=0;
          ^

"./Test_Saxs_spheres.c", line 9339: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i,j;
          ^

"./Test_Saxs_spheres.c", line 9339: warning: variable "j" was declared but never referenced [declared_but_not_referenced]
      int i,j;
            ^

"./Test_Saxs_spheres.c", line 9340: warning: variable "p1" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
              ^

"./Test_Saxs_spheres.c", line 9340: warning: variable "p2" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                  ^

"./Test_Saxs_spheres.c", line 9340: warning: variable "p3" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                      ^

"./Test_Saxs_spheres.c", line 9436: warning: variable "status" was set but never used [set_but_not_used]
      int status;
          ^

"./Test_Saxs_spheres.c", line 9501: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
    int i,j;
        ^

"./Test_Saxs_spheres.c", line 9501: warning: variable "j" was declared but never referenced [declared_but_not_referenced]
    int i,j;
          ^

"./Test_Saxs_spheres.c", line 9857: warning: variable "k" was declared but never referenced [declared_but_not_referenced]
      int i,j,k;
              ^

"./Test_Saxs_spheres.c", line 9858: warning: variable "e" was declared but never referenced [declared_but_not_referenced]
      double e,p2;
             ^

"./Test_Saxs_spheres.c", line 9958: warning: variable "v" was declared but never referenced [declared_but_not_referenced]
    double l0, l1, v, l_full, l, l_1, dt, dl, d_phi, theta, my_a_v;
                   ^

"./Test_Saxs_spheres.c", line 9958: warning: variable "l_1" was declared but never referenced [declared_but_not_referenced]
    double l0, l1, v, l_full, l, l_1, dt, dl, d_phi, theta, my_a_v;
                                 ^

"./Test_Saxs_spheres.c", line 9958: warning: variable "dt" was declared but never referenced [declared_but_not_referenced]
    double l0, l1, v, l_full, l, l_1, dt, dl, d_phi, theta, my_a_v;
                                      ^

"./Test_Saxs_spheres.c", line 9958: warning: variable "d_phi" was declared but never referenced [declared_but_not_referenced]
    double l0, l1, v, l_full, l, l_1, dt, dl, d_phi, theta, my_a_v;
                                              ^

"./Test_Saxs_spheres.c", line 9958: warning: variable "theta" was declared but never referenced [declared_but_not_referenced]
    double l0, l1, v, l_full, l, l_1, dt, dl, d_phi, theta, my_a_v;
                                                     ^

"./Test_Saxs_spheres.c", line 9959: warning: variable "axis_x" was declared but never referenced [declared_but_not_referenced]
    double aim_x=0, aim_y=0, aim_z=1, axis_x, axis_y, axis_z;
                                      ^

"./Test_Saxs_spheres.c", line 9959: warning: variable "axis_y" was declared but never referenced [declared_but_not_referenced]
    double aim_x=0, aim_y=0, aim_z=1, axis_x, axis_y, axis_z;
                                              ^

"./Test_Saxs_spheres.c", line 9959: warning: variable "axis_z" was declared but never referenced [declared_but_not_referenced]
    double aim_x=0, aim_y=0, aim_z=1, axis_x, axis_y, axis_z;
                                                      ^

"./Test_Saxs_spheres.c", line 9960: warning: variable "arg" was declared but never referenced [declared_but_not_referenced]
    double arg, tmp_vx, tmp_vy, tmp_vz, vout_x, vout_y, vout_z;
           ^

"./Test_Saxs_spheres.c", line 9960: warning: variable "tmp_vx" was declared but never referenced [declared_but_not_referenced]
    double arg, tmp_vx, tmp_vy, tmp_vz, vout_x, vout_y, vout_z;
                ^

"./Test_Saxs_spheres.c", line 9960: warning: variable "tmp_vy" was declared but never referenced [declared_but_not_referenced]
    double arg, tmp_vx, tmp_vy, tmp_vz, vout_x, vout_y, vout_z;
                        ^

"./Test_Saxs_spheres.c", line 9960: warning: variable "tmp_vz" was declared but never referenced [declared_but_not_referenced]
    double arg, tmp_vx, tmp_vy, tmp_vz, vout_x, vout_y, vout_z;
                                ^

"./Test_Saxs_spheres.c", line 9960: warning: variable "vout_x" was declared but never referenced [declared_but_not_referenced]
    double arg, tmp_vx, tmp_vy, tmp_vz, vout_x, vout_y, vout_z;
                                        ^

"./Test_Saxs_spheres.c", line 9960: warning: variable "vout_y" was declared but never referenced [declared_but_not_referenced]
    double arg, tmp_vx, tmp_vy, tmp_vz, vout_x, vout_y, vout_z;
                                                ^

"./Test_Saxs_spheres.c", line 9960: warning: variable "vout_z" was declared but never referenced [declared_but_not_referenced]
    double arg, tmp_vx, tmp_vy, tmp_vz, vout_x, vout_y, vout_z;
                                                        ^

"./Test_Saxs_spheres.c", line 11451: warning: variable "t" was declared but never referenced [declared_but_not_referenced]
    time_t  t;
            ^

"./Test_Saxs_spheres.c", line 11452: warning: variable "ct" was set but never used [set_but_not_used]
    clock_t ct;
            ^

"./Test_Saxs_spheres.c", line 1485: warning: variable "mcstartdate" was set but never used [set_but_not_used]
  static   long mcstartdate            = 0; /* start simulation time */
                ^

"./Test_Saxs_spheres.c", line 2888: warning: function "strcpy_valid" was declared but never referenced [declared_but_not_referenced]
  static char *strcpy_valid(char *valid, char *original)
               ^

mcgenstate:
     84, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar:
     98, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar_void:
    131, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void:
    156, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void_array:
    179, Generating acc routine seq
         Generating NVIDIA GPU code
particle_restore:
    190, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getuservar_byid:
    199, Generating acc routine seq
         Generating NVIDIA GPU code
particle_uservar_init:
    209, Generating acc routine seq
         Generating NVIDIA GPU code
noprintf:
   1532, Generating acc routine seq
         Generating NVIDIA GPU code
str_comp:
   1536, Generating acc routine seq
         Generating NVIDIA GPU code
str_len:
   1545, Generating acc routine seq
         Generating NVIDIA GPU code
mcget_ncount:
   4097, Generating acc routine seq
         Generating NVIDIA GPU code
coords_set:
   4528, Generating acc routine seq
         Generating NVIDIA GPU code
coords_get:
   4539, Generating acc routine seq
         Generating NVIDIA GPU code
coords_add:
   4548, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sub:
   4560, Generating acc routine seq
         Generating NVIDIA GPU code
coords_neg:
   4572, Generating acc routine seq
         Generating NVIDIA GPU code
coords_scale:
   4582, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sp:
   4592, Generating acc routine seq
         Generating NVIDIA GPU code
coords_xp:
   4600, Generating acc routine seq
         Generating NVIDIA GPU code
coords_len:
   4610, Generating acc routine seq
         Generating NVIDIA GPU code
coords_print:
   4632, Generating acc routine seq
         Generating NVIDIA GPU code
coords_norm:
   4639, Generating acc routine seq
         Generating NVIDIA GPU code
rot_set_rotation:
   4685, Generating acc routine seq
         Generating NVIDIA GPU code
rot_test_identity:
   4720, Generating acc routine seq
         Generating NVIDIA GPU code
rot_mul:
   4731, Generating acc routine seq
         Generating NVIDIA GPU code
rot_copy:
   4748, Generating acc routine seq
         Generating NVIDIA GPU code
rot_transpose:
   4759, Generating acc routine seq
         Generating NVIDIA GPU code
rot_apply:
   4775, Generating acc routine seq
         Generating NVIDIA GPU code
vec_prod_func:
   4804, Generating acc routine seq
         Generating NVIDIA GPU code
scalar_prod:
   4815, Generating acc routine seq
         Generating NVIDIA GPU code
norm_func:
   4819, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange:
   4996, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange_polarisation:
   5027, Generating acc routine seq
         Generating NVIDIA GPU code
normal_vec:
   5044, Generating acc routine seq
         Generating NVIDIA GPU code
solve_2nd_order:
   5143, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_circle:
   5227, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_angular:
   5293, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_real:
   5370, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_srandom:
   5642, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_random:
   5652, Generating acc routine seq
         Generating NVIDIA GPU code
_hash:
   5678, Generating acc routine seq
         Generating NVIDIA GPU code
_randnorm2:
   5719, Generating acc routine seq
         Generating NVIDIA GPU code
_randtriangle:
   5730, Generating acc routine seq
         Generating NVIDIA GPU code
_rand01:
   5735, Generating acc routine seq
         Generating NVIDIA GPU code
_randpm1:
   5743, Generating acc routine seq
         Generating NVIDIA GPU code
_rand0max:
   5751, Generating acc routine seq
         Generating NVIDIA GPU code
_randminmax:
   5758, Generating acc routine seq
         Generating NVIDIA GPU code
mcsetstate:
   6400, Generating acc routine seq
         Generating NVIDIA GPU code
mcgetstate:
   6433, Generating acc routine seq
         Generating NVIDIA GPU code
inside_rectangle:
   6494, Generating acc routine seq
         Generating NVIDIA GPU code
box_intersect:
   6510, Generating acc routine seq
         Generating NVIDIA GPU code
cylinder_intersect:
   6596, Generating acc routine seq
         Generating NVIDIA GPU code
sphere_intersect:
   6664, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Index:
   7803, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value:
   7871, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value2d:
   7950, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d:
   8418, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d_nearest:
   8434, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp2d:
   8452, Generating acc routine seq
         Generating NVIDIA GPU code
init:
   9566, Generating update device(_src_var,_sample_var,_instrument_var,_psd4pi_var,_psd0_var,_detector2_var,_Origin_var,_detector_var)
class_Progress_bar_trace:
   9609, Generating acc routine seq
         Generating NVIDIA GPU code
class_Source_flat_trace:
   9700, Generating acc routine seq
         Generating NVIDIA GPU code
class_PSD_monitor_trace:
   9837, Generating acc routine seq
         Generating NVIDIA GPU code
class_Saxs_spheres_trace:
   9928, Generating acc routine seq
         Generating NVIDIA GPU code
class_PSD_monitor_4PI_trace:
  10072, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace:
  10149, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace_all:
  10352, Generating implicit firstprivate(gpu_innerloop)
         Generating NVIDIA GPU code
      10363, #pragma acc loop gang(numgangs), vector(vecsize) /* blockIdx.x threadIdx.x */
  10352, Local memory used for .inl_particle_11675,particleN,.inl_.inl_mcphoton_0_11691,.inl_.X1857_11693,.inl_.inl_.X2054_13_11692
  10363, Generating implicit firstprivate(seed,_particle)
finally:
  10925, Generating update self(_src_var,_sample_var,_instrument_var,_psd4pi_var,_psd0_var,_detector2_var,_Origin_var,_detector_var)
mcenabletrace:
   5877, Generating update device(mcdotrace)
/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/tools/../miniconda3/bin//ld: warning: /tmp/pgcudafatSPPZeP2gG7JL.o: missing .note.GNU-stack section implies executable stack
/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/tools/../miniconda3/bin//ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker
DEBUG: CMD: nvc finished
INFO: ===