INFO: No output directory specified (--dir) INFO: Using directory: "SAXS_saxlab_20241024_055119" INFO: Regenerating c-file: SAXS_saxlab.c DEBUG: CMD: /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/bin/mcxtrace -t -o ./SAXS_saxlab.c SAXS_saxlab.instr CFLAGS= ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: ----------------------------------------------------------- DEBUG: CMD: /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/bin/mcxtrace finished INFO: Recompiling: ./SAXS_saxlab.out DEBUG: CMD: nvc -o ./SAXS_saxlab.out ./SAXS_saxlab.c -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -Wl,-rpath-link,/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -L/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -mtune=haswell -fPIC -O2 -isystem /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include -fast -Minfo=accel -acc=gpu -gpu=managed -DOPENACC "./SAXS_saxlab.c", line 4476: warning: variable "num" was declared but never referenced [declared_but_not_referenced] int num = 3; ^ Remark: individual warnings can be suppressed with "--diag_suppress " "./SAXS_saxlab.c", line 6599: warning: variable "ret" was declared but never referenced [declared_but_not_referenced] int ret=1,stat=0,plane_stat=0; ^ "./SAXS_saxlab.c", line 6772: warning: variable "D" was declared but never referenced [declared_but_not_referenced] double A,B,C,D,k; ^ "./SAXS_saxlab.c", line 8918: warning: variable "tc2" was set but never used [set_but_not_used] Coords tc1, tc2; ^ "./SAXS_saxlab.c", line 8906: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 1; ^ "./SAXS_saxlab.c", line 8959: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 2; ^ "./SAXS_saxlab.c", line 9030: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 3; ^ "./SAXS_saxlab.c", line 9091: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 4; ^ "./SAXS_saxlab.c", line 9153: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 5; ^ "./SAXS_saxlab.c", line 9202: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 6; ^ "./SAXS_saxlab.c", line 9251: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 7; ^ "./SAXS_saxlab.c", line 9300: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 8; ^ "./SAXS_saxlab.c", line 9361: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 9; ^ "./SAXS_saxlab.c", line 9410: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 10; ^ "./SAXS_saxlab.c", line 9472: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 11; ^ "./SAXS_saxlab.c", line 9534: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 12; ^ "./SAXS_saxlab.c", line 9597: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 13; ^ "./SAXS_saxlab.c", line 9659: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 14; ^ "./SAXS_saxlab.c", line 9722: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 15; ^ "./SAXS_saxlab.c", line 9785: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 16; ^ "./SAXS_saxlab.c", line 9847: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 17; ^ "./SAXS_saxlab.c", line 9910: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced] int current_setpos_index = 18; ^ "./SAXS_saxlab.c", line 10058: warning: variable "status" was set but never used [set_but_not_used] int status=0; ^ "./SAXS_saxlab.c", line 10185: warning: variable "i" was declared but never referenced [declared_but_not_referenced] int i; ^ "./SAXS_saxlab.c", line 10308: warning: variable "status" was set but never used [set_but_not_used] int status=0; ^ "./SAXS_saxlab.c", line 10356: warning: variable "i" was declared but never referenced [declared_but_not_referenced] int i,j; ^ "./SAXS_saxlab.c", line 10356: warning: variable "j" was declared but never referenced [declared_but_not_referenced] int i,j; ^ "./SAXS_saxlab.c", line 10357: warning: variable "p1" was declared but never referenced [declared_but_not_referenced] double *p1,*p2,*p3; ^ "./SAXS_saxlab.c", line 10357: warning: variable "p2" was declared but never referenced [declared_but_not_referenced] double *p1,*p2,*p3; ^ "./SAXS_saxlab.c", line 10357: warning: variable "p3" was declared but never referenced [declared_but_not_referenced] double *p1,*p2,*p3; ^ "./SAXS_saxlab.c", line 10681: warning: variable "z1" was set but never used [set_but_not_used] double xx,yy,x1,y1,z1; ^ "./SAXS_saxlab.c", line 10683: warning: variable "F1" was declared but never referenced [declared_but_not_referenced] double F1=1.0; ^ "./SAXS_saxlab.c", line 11157: warning: variable "dSingle" was set but never used [set_but_not_used] double dSingle,lambda; // dSingle - thickness of one layer of the multilayer, AA ^ "./SAXS_saxlab.c", line 10998: warning: variable "A" was declared but never referenced [declared_but_not_referenced] double A,B,C,D,l01,l11,l02,l12; ^ "./SAXS_saxlab.c", line 10998: warning: variable "B" was declared but never referenced [declared_but_not_referenced] double A,B,C,D,l01,l11,l02,l12; ^ "./SAXS_saxlab.c", line 10998: warning: variable "C" was declared but never referenced [declared_but_not_referenced] double A,B,C,D,l01,l11,l02,l12; ^ "./SAXS_saxlab.c", line 10998: warning: variable "D" was declared but never referenced [declared_but_not_referenced] double A,B,C,D,l01,l11,l02,l12; ^ "./SAXS_saxlab.c", line 10999: warning: variable "x_test1" was set but never used [set_but_not_used] double x_test1,y_test1,z_test1,x_test2,y_test2,z_test2,dist; // intersection with the elliptical surface ^ "./SAXS_saxlab.c", line 10999: warning: variable "y_test2" was set but never used [set_but_not_used] double x_test1,y_test1,z_test1,x_test2,y_test2,z_test2,dist; // intersection with the elliptical surface ^ "./SAXS_saxlab.c", line 10999: warning: variable "dist" was declared but never referenced [declared_but_not_referenced] double x_test1,y_test1,z_test1,x_test2,y_test2,z_test2,dist; // intersection with the elliptical surface ^ "./SAXS_saxlab.c", line 11229: warning: variable "k" was declared but never referenced [declared_but_not_referenced] int i,j,k; ^ "./SAXS_saxlab.c", line 11230: warning: variable "e" was declared but never referenced [declared_but_not_referenced] double e,p2; ^ "./SAXS_saxlab.c", line 12645: warning: variable "j" was declared but never referenced [declared_but_not_referenced] int i,j,N=10; ^ "./SAXS_saxlab.c", line 12645: warning: variable "N" was declared but never referenced [declared_but_not_referenced] int i,j,N=10; ^ "./SAXS_saxlab.c", line 13043: warning: variable "t" was declared but never referenced [declared_but_not_referenced] time_t t; ^ "./SAXS_saxlab.c", line 13044: warning: variable "ct" was set but never used [set_but_not_used] clock_t ct; ^ "./SAXS_saxlab.c", line 1485: warning: variable "mcstartdate" was set but never used [set_but_not_used] static long mcstartdate = 0; /* start simulation time */ ^ "./SAXS_saxlab.c", line 2888: warning: function "strcpy_valid" was declared but never referenced [declared_but_not_referenced] static char *strcpy_valid(char *valid, char *original) ^ mcgenstate: 84, Generating acc routine seq Generating NVIDIA GPU code particle_getvar: 98, Generating acc routine seq Generating NVIDIA GPU code particle_getvar_void: 131, Generating acc routine seq Generating NVIDIA GPU code particle_setvar_void: 156, Generating acc routine seq Generating NVIDIA GPU code particle_setvar_void_array: 179, Generating acc routine seq Generating NVIDIA GPU code particle_restore: 190, Generating acc routine seq Generating NVIDIA GPU code particle_getuservar_byid: 199, Generating acc routine seq Generating NVIDIA GPU code particle_uservar_init: 209, Generating acc routine seq Generating NVIDIA GPU code noprintf: 1532, Generating acc routine seq Generating NVIDIA GPU code str_comp: 1536, Generating acc routine seq Generating NVIDIA GPU code str_len: 1545, Generating acc routine seq Generating NVIDIA GPU code mcget_ncount: 4097, Generating acc routine seq Generating NVIDIA GPU code coords_set: 4528, Generating acc routine seq Generating NVIDIA GPU code coords_get: 4539, Generating acc routine seq Generating NVIDIA GPU code coords_add: 4548, Generating acc routine seq Generating NVIDIA GPU code coords_sub: 4560, Generating acc routine seq Generating NVIDIA GPU code coords_neg: 4572, Generating acc routine seq Generating NVIDIA GPU code coords_scale: 4582, Generating acc routine seq Generating NVIDIA GPU code coords_sp: 4592, Generating acc routine seq Generating NVIDIA GPU code coords_xp: 4600, Generating acc routine seq Generating NVIDIA GPU code coords_len: 4610, Generating acc routine seq Generating NVIDIA GPU code coords_print: 4632, Generating acc routine seq Generating NVIDIA GPU code coords_norm: 4639, Generating acc routine seq Generating NVIDIA GPU code rot_set_rotation: 4685, Generating acc routine seq Generating NVIDIA GPU code rot_test_identity: 4720, Generating acc routine seq Generating NVIDIA GPU code rot_mul: 4731, Generating acc routine seq Generating NVIDIA GPU code rot_copy: 4748, Generating acc routine seq Generating NVIDIA GPU code rot_transpose: 4759, Generating acc routine seq Generating NVIDIA GPU code rot_apply: 4775, Generating acc routine seq Generating NVIDIA GPU code vec_prod_func: 4804, Generating acc routine seq Generating NVIDIA GPU code scalar_prod: 4815, Generating acc routine seq Generating NVIDIA GPU code norm_func: 4819, Generating acc routine seq Generating NVIDIA GPU code mccoordschange: 4996, Generating acc routine seq Generating NVIDIA GPU code mccoordschange_polarisation: 5027, Generating acc routine seq Generating NVIDIA GPU code normal_vec: 5044, Generating acc routine seq Generating NVIDIA GPU code solve_2nd_order: 5143, Generating acc routine seq Generating NVIDIA GPU code _randvec_target_circle: 5227, Generating acc routine seq Generating NVIDIA GPU code _randvec_target_rect_angular: 5293, Generating acc routine seq Generating NVIDIA GPU code _randvec_target_rect_real: 5370, Generating acc routine seq Generating NVIDIA GPU code kiss_srandom: 5642, Generating acc routine seq Generating NVIDIA GPU code kiss_random: 5652, Generating acc routine seq Generating NVIDIA GPU code _hash: 5678, Generating acc routine seq Generating NVIDIA GPU code _randnorm2: 5719, Generating acc routine seq Generating NVIDIA GPU code _randtriangle: 5730, Generating acc routine seq Generating NVIDIA GPU code _rand01: 5735, Generating acc routine seq Generating NVIDIA GPU code _randpm1: 5743, Generating acc routine seq Generating NVIDIA GPU code _rand0max: 5751, Generating acc routine seq Generating NVIDIA GPU code _randminmax: 5758, Generating acc routine seq Generating NVIDIA GPU code mcsetstate: 6400, Generating acc routine seq Generating NVIDIA GPU code mcgetstate: 6433, Generating acc routine seq Generating NVIDIA GPU code inside_rectangle: 6494, Generating acc routine seq Generating NVIDIA GPU code box_intersect: 6510, Generating acc routine seq Generating NVIDIA GPU code cylinder_intersect: 6596, Generating acc routine seq Generating NVIDIA GPU code sphere_intersect: 6664, Generating acc routine seq Generating NVIDIA GPU code ellipsoid_intersect: 6690, Generating implicit acc routine seq Generating acc routine seq Generating NVIDIA GPU code Table_Index: 7829, Generating acc routine seq Generating NVIDIA GPU code Table_Value: 7897, Generating acc routine seq Generating NVIDIA GPU code Table_Value2d: 7976, Generating acc routine seq Generating NVIDIA GPU code Table_Interp1d: 8444, Generating acc routine seq Generating NVIDIA GPU code Table_Interp1d_nearest: 8460, Generating acc routine seq Generating NVIDIA GPU code Table_Interp2d: 8478, Generating acc routine seq Generating NVIDIA GPU code CoordTransME: 8504, Generating implicit acc routine seq Generating acc routine seq Generating NVIDIA GPU code CoordTransEM: 8512, Generating implicit acc routine seq Generating acc routine seq Generating NVIDIA GPU code init: 10516, Generating update device(_Origin_var,_detector_var,_mirror_var,_mirrorexit_var,_psdin3_var,_ymirrorrot_var,_xmirrorrot_var,_instrument_var,_mirrormnt_var,_mirrorentryslit_var,_mirrorout_var,_pinhole3_var,_pinhole1_var,_psd1_var,_psdin1_var,_pinhole2_var,_psdin2_var,_Source_var,_energy_BEF_var) class_Progress_bar_trace: 10559, Generating acc routine seq Generating NVIDIA GPU code class_Source_gaussian_trace: 10650, Generating acc routine seq Generating NVIDIA GPU code class_E_monitor_trace: 10827, Generating acc routine seq Generating NVIDIA GPU code class_Slit_trace: 10902, Generating acc routine seq Generating NVIDIA GPU code class_TwinKB_ML_trace: 10972, Generating acc routine seq Generating NVIDIA GPU code class_PSD_monitor_trace: 11209, Generating acc routine seq Generating NVIDIA GPU code raytrace: 11304, Generating acc routine seq Generating NVIDIA GPU code raytrace_all: 11678, Generating implicit firstprivate(gpu_innerloop) Generating NVIDIA GPU code 11689, #pragma acc loop gang(numgangs), vector(vecsize) /* blockIdx.x threadIdx.x */ 11678, Local memory used for .inl_particle_15600,particleN,.inl_.inl_mcphoton_0_15616,.inl_.X1913_15618,.inl_.inl_.X2111_13_15617 11689, Generating implicit firstprivate(seed,_particle) finally: 12369, Generating update self(_Origin_var,_detector_var,_mirror_var,_mirrorexit_var,_psdin3_var,_xmirrorrot_var,_ymirrorrot_var,_instrument_var,_mirrormnt_var,_mirrorentryslit_var,_mirrorout_var,_pinhole3_var,_pinhole1_var,_psd1_var,_psdin1_var,_pinhole2_var,_psdin2_var,_Source_var,_energy_BEF_var) mcenabletrace: 5877, Generating update device(mcdotrace) /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/tools/../miniconda3/bin//ld: warning: /tmp/pgcudafatfY2MpKiObSj8.o: missing .note.GNU-stack section implies executable stack /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/tools/../miniconda3/bin//ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker DEBUG: CMD: nvc finished INFO: ===