INFO: No output directory specified (--dir) INFO: Using directory: "Test_Absorption_20250426_064836" INFO: Regenerating c-file: Test_Absorption.c WARNING: Full-path code-generator "/home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/bin/mcxtrace-antlr -I${MCXTRACE}" not found!! WARNING: Attempting replacement by "mcxtrace-antlr -I${MCXTRACE}" DEBUG: CMD: mcxtrace-antlr -I${MCXTRACE} -t -o ./Test_Absorption.c Test_Absorption.instr 2025-04-26 06:49:27.824 | DEBUG | mccode_antlr.translators.c:sort_include_hierarchy:41 - sort includes :Source_flat(0):read_table-lib :Filter(0):read_table-lib :Filter(1):interoff-lib :Absorption_sample(0):read_table-lib :Absorption_sample(1):interoff-lib :Abs_objects(0):read_table-lib :Abs_objects(1):interoff-lib :Fluorescence(0):read_table-lib 2025-04-26 06:49:27.824 | DEBUG | mccode_antlr.translators.c:sort_include_hierarchy:66 - sorted to read_table-lib interoff-lib 2025-04-26 06:49:27.824 | DEBUG | mccode_antlr.translators.c:sort_include_hierarchy:66 - sorted to read_table-lib interoff-lib 2025-04-26 06:49:27.824 | DEBUG | mccode_antlr.translators.c:sort_include_hierarchy:66 - sorted to read_table-lib interoff-lib 2025-04-26 06:49:27.824 | DEBUG | mccode_antlr.translators.c:sort_include_hierarchy:66 - sorted to read_table-lib interoff-lib 2025-04-26 06:49:27.825 | DEBUG | mccode_antlr.translators.c:sort_include_hierarchy:66 - sorted to read_table-lib interoff-lib line 2:2 extraneous input '%' expecting {, '__extension__', '__m128', '__m128d', '__m128i', '__typeof__', '__inline__', '__stdcall', '__declspec', '__cdecl', '__clrcall', '__fastcall', '__thiscall', '__vectorcall', '__attribute__', 'auto', 'char', 'const', 'double', 'enum', 'extern', 'float', 'inline', 'int', 'long', 'register', 'restrict', 'short', 'signed', 'static', 'struct', 'typedef', 'union', 'unsigned', 'void', 'volatile', '_Alignas', '_Atomic', '_Bool', '_Complex', '_Noreturn', '_Static_assert', '_Thread_local', '(', '*', '^', ';', Identifier} 2025-04-26 06:49:29.047 | ERROR | mccode_antlr.translators.c_listener:syntaxError:35 - Syntax error in parsing 2,2 2025-04-26 06:49:29.047 | ERROR | mccode_antlr.translators.c_listener:syntaxError:41 - ~~^ extraneous input '%' expecting {, '__extension__', '__m128', '__m128d', '__m128i', '__typeof__', '__inline__', '__stdcall', '__declspec', '__cdecl', '__clrcall', '__fastcall', '__thiscall', '__vectorcall', '__attribute__', 'auto', 'char', 'const', 'double', 'enum', 'extern', 'float', 'inline', 'int', 'long', 'register', 'restrict', 'short', 'signed', 'static', 'struct', 'typedef', 'union', 'unsigned', 'void', 'volatile', '_Alignas', '_Atomic', '_Bool', '_Complex', '_Noreturn', '_Static_assert', '_Thread_local', '(', '*', '^', ';', Identifier} 2025-04-26 06:49:29.047 | INFO | mccode_antlr.translators.c_listener:syntaxError:43 - 2025-04-26 06:49:29.047 | INFO | mccode_antlr.translators.c_listener:syntaxError:43 - #ifndef FLUORESCENCE_DECL line 2:11 no viable alternative at input 'include "interoff-lib"' 2025-04-26 06:49:29.086 | ERROR | mccode_antlr.translators.c_listener:syntaxError:35 - Syntax error in parsing 2,11 2025-04-26 06:49:29.086 | ERROR | mccode_antlr.translators.c_listener:syntaxError:41 - ~~~~~~~~~~~^ no viable alternative at input 'include "interoff-lib"' 2025-04-26 06:49:29.087 | INFO | mccode_antlr.translators.c_listener:syntaxError:43 - 2025-04-26 06:49:29.087 | INFO | mccode_antlr.translators.c_listener:syntaxError:43 - #ifndef FLUORESCENCE_DECL 2025-04-26 06:49:29.399 | INFO | mccode_antlr.translators.c_listener:visitDeclarator:341 - Could not convert an integer from ('XRAYLIB_LINES_MAX+1',) due to invalid literal for int() with base 10: 'XRAYLIB_LINES_MAX+1' The instrument has 4 parameters ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: -> GPU kernel from component Origin -> GPU kernel from component source1 -> GPU kernel from component sample_mount_point -> GPU kernel from component sample_scan1 -> GPU kernel from component sample_scan2 -> GPU kernel from component sample_scan3 Component sample_scan4 is NOACC, CPUONLY=True ->FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component psd ----------------------------------------------------------- CFLAGS= -lxrl -DUSE_OFF -DFUNNEL DEBUG: CMD: mcxtrace-antlr -I${MCXTRACE} finished INFO: Recompiling: ./Test_Absorption.out DEBUG: CMD: mpicc -o ./Test_Absorption.out ./Test_Absorption.c -lm -DUSE_MPI -lmpi -fno-PIC -fPIE -flto -O3 -mtune=native -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -lxrl -DUSE_OFF -DFUNNEL ./Test_Absorption.c:5619:6: error: conflicting types for 'mt_srandom'; have 'void(uint32_t)' {aka 'void(unsigned int)'} 5619 | void mt_srandom(uint32_t seed) { | ^~~~~~~~~~ ./Test_Absorption.c:887:6: note: previous declaration of 'mt_srandom' with type 'void(long unsigned int)' 887 | void mt_srandom (unsigned long x); | ^~~~~~~~~~ ./Test_Absorption.c:5657:10: error: conflicting types for 'mt_random'; have 'uint32_t(void)' {aka 'unsigned int(void)'} 5657 | uint32_t mt_random(void) { | ^~~~~~~~~ ./Test_Absorption.c:886:15: note: previous declaration of 'mt_random' with type 'long unsigned int(void)' 886 | unsigned long mt_random(void); | ^~~~~~~~~ ./Test_Absorption.c:7471:3: error: expected identifier or '(' before '%' token 7471 | %include "interoff-lib" // for OFF/PLY geometry | ^ In file included from /home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include/xraylib/xraylib.h:56, from ./Test_Absorption.c:7484: /home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include/xraylib/xraylib-error.h:29:3: warning: data definition has no type or storage class 29 | } xrl_error_code; | ^~~~~~~~~~~~~~ /home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include/xraylib/xraylib-error.h:29:3: warning: type defaults to 'int' in declaration of 'xrl_error_code' [-Wimplicit-int] /home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include/xraylib/xraylib-error.h:44:3: error: expected specifier-qualifier-list before 'xrl_error_code' 44 | xrl_error_code code; | ^~~~~~~~~~~~~~ /home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include/xraylib/xraylib-error.h:55:47: error: expected declaration specifiers or '...' before 'xrl_error_code' 55 | int xrl_error_matches(const xrl_error *error, xrl_error_code code); | ^~~~~~~~~~~~~~ ./Test_Absorption.c: In function 'fluo_get_material': ./Test_Absorption.c:7616:18: warning: implicit declaration of function 'Open_File' [-Wimplicit-function-declaration] 7616 | FILE *file = Open_File(filename, "r", NULL); | ^~~~~~~~~ ./Test_Absorption.c:7616:18: warning: initialization of 'FILE *' from 'int' makes pointer from integer without a cast [-Wint-conversion] ./Test_Absorption.c: At top level: ./Test_Absorption.c:8263:9: error: conflicting types for 'Open_File'; have 'FILE *(char *, const char *, char *)' 8263 | FILE *Open_File(char *File, const char *Mode, char *Path) | ^~~~~~~~~ ./Test_Absorption.c:7616:18: note: previous implicit declaration of 'Open_File' with type 'int()' 7616 | FILE *file = Open_File(filename, "r", NULL); | ^~~~~~~~~ ./Test_Absorption.c: In function 'class_Fluorescence_initialize': ./Test_Absorption.c:12067:41: error: 'xrl_error' {aka 'struct _xrl_error'} has no member named 'message' 12067 | NAME_CURRENT_COMP, material, error->message)); | ^~ ./Test_Absorption.c:622:10: note: in definition of macro 'exit' 622 | exit(code); \ | ^~~~ ./Test_Absorption.c:12092:79: error: 'xrl_error' {aka 'struct _xrl_error'} has no member named 'message' 12092 | exit(fprintf(stderr, "ERROR: %s: Z=%i %s\n", NAME_CURRENT_COMP, Z, error->message)); | ^~ ./Test_Absorption.c:622:10: note: in definition of macro 'exit' 622 | exit(code); \ | ^~~~ INFO: call to mpicc failed with Command 'mpicc -o ./Test_Absorption.out ./Test_Absorption.c -lm -DUSE_MPI -lmpi -fno-PIC -fPIE -flto -O3 -mtune=native -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -lxrl -DUSE_OFF -DFUNNEL' returned non-zero exit status 1. Traceback (most recent call last): File "/home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/mxrun.py", line 616, in main() File "/home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/mxrun.py", line 524, in main mcstas.prepare(options) File "/home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/mccode.py", line 311, in prepare Process(lexer.quote(options.cc)).run(args) File "/home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/mccode.py", line 77, in run raise err File "/home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/mccode.py", line 73, in run proc = run(command, shell=True, check=True, text=True, capture_output=pipe) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib/python3.12/subprocess.py", line 571, in run raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command 'mpicc -o ./Test_Absorption.out ./Test_Absorption.c -lm -DUSE_MPI -lmpi -fno-PIC -fPIE -flto -O3 -mtune=native -march=native -fno-math-errno -ftree-vectorize -g -DNDEBUG -D_POSIX_SOURCE -std=c99 -lm -lxrl -DUSE_OFF -DFUNNEL' returned non-zero exit status 1.