INFO: No output directory specified (--dir)
INFO: Using directory: "Test_capillary_20250514_121525"
INFO: Regenerating c-file: Test_capillary.c
DEBUG: CMD: /home/willend/micromamba/bin/mcxtrace -t -o ./Test_capillary.c Test_capillary.instr
CFLAGS=
  
-----------------------------------------------------------

Generating single GPU kernel or single CPU section layout: 

-----------------------------------------------------------

Generating GPU/CPU -DFUNNEL layout:

-----------------------------------------------------------
DEBUG: CMD: /home/willend/micromamba/bin/mcxtrace finished
INFO: Recompiling: ./Test_capillary.out
DEBUG: CMD: nvc -o ./Test_capillary.out ./Test_capillary.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/willend/micromamba/lib -Wl,-rpath-link,/home/willend/micromamba/lib -L/home/willend/micromamba/lib -mtune=haswell -fPIC -O2 -isystem /home/willend/micromamba/include -fast -Minfo=accel -acc=gpu -gpu=mem:managed -DOPENACC
"./Test_capillary.c", line 4568: warning: variable "num" was declared but never referenced [declared_but_not_referenced]
          int num = 3;
              ^

Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>"

"./Test_capillary.c", line 6269: warning: variable "status" was set but never used [set_but_not_used]
        int status;
            ^

"./Test_capillary.c", line 6720: warning: variable "ret" was declared but never referenced [declared_but_not_referenced]
    int ret=1,stat=0,plane_stat=0;
        ^

"./Test_capillary.c", line 6893: warning: variable "D" was declared but never referenced [declared_but_not_referenced]
    double A,B,C,D,k;
                 ^

"/usr/include/math.h", line 30: warning: #warning directive: A macro called log was already defined when <math.h> was included. [warning_directive]
  # warning A macro called log was already defined when <math.h> was included.
    ^

"/usr/include/math.h", line 31: warning: #warning directive: This will cause compilation problems. [warning_directive]
  # warning This will cause compilation problems.
    ^

"./Test_capillary.c", line 8939: warning: variable "tc2" was set but never used [set_but_not_used]
      Coords tc1, tc2;
                  ^

"./Test_capillary.c", line 8927: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 1;
        ^

"./Test_capillary.c", line 8984: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 2;
        ^

"./Test_capillary.c", line 9072: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 3;
        ^

"./Test_capillary.c", line 9144: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 4;
        ^

"./Test_capillary.c", line 9212: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 5;
        ^

"./Test_capillary.c", line 9280: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 6;
        ^

"./Test_capillary.c", line 9329: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 7;
        ^

"./Test_capillary.c", line 9401: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 8;
        ^

"./Test_capillary.c", line 9473: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 9;
        ^

"./Test_capillary.c", line 9545: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 10;
        ^

"./Test_capillary.c", line 9617: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 11;
        ^

"./Test_capillary.c", line 9689: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 12;
        ^

"./Test_capillary.c", line 9761: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 13;
        ^

"./Test_capillary.c", line 9833: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 14;
        ^

"./Test_capillary.c", line 9905: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 15;
        ^

"./Test_capillary.c", line 9977: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 16;
        ^

"./Test_capillary.c", line 10049: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 17;
        ^

"./Test_capillary.c", line 10121: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 18;
        ^

"./Test_capillary.c", line 10193: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 19;
        ^

"./Test_capillary.c", line 10261: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 20;
        ^

"./Test_capillary.c", line 10421: warning: variable "status" was set but never used [set_but_not_used]
      int status=0;
          ^

"./Test_capillary.c", line 10491: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i,j;
          ^

"./Test_capillary.c", line 10491: warning: variable "j" was declared but never referenced [declared_but_not_referenced]
      int i,j;
            ^

"./Test_capillary.c", line 10492: warning: variable "p1" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
              ^

"./Test_capillary.c", line 10492: warning: variable "p2" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                  ^

"./Test_capillary.c", line 10492: warning: variable "p3" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                      ^

"./Test_capillary.c", line 10550: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i;
          ^

"./Test_capillary.c", line 10607: warning: variable "status" was set but never used [set_but_not_used]
    int status;
        ^

"./Test_capillary.c", line 11058: warning: variable "k" was declared but never referenced [declared_but_not_referenced]
      int i,j,k;
              ^

"./Test_capillary.c", line 11059: warning: variable "e" was declared but never referenced [declared_but_not_referenced]
      double e,p2;
             ^

"./Test_capillary.c", line 11289: warning: variable "delta" was declared but never referenced [declared_but_not_referenced]
                  double Qc,Q,f1,f2,delta,beta,na,e,k2;
                                    ^

"./Test_capillary.c", line 11289: warning: variable "beta" was declared but never referenced [declared_but_not_referenced]
                  double Qc,Q,f1,f2,delta,beta,na,e,k2;
                                          ^

"./Test_capillary.c", line 11289: warning: variable "k2" was declared but never referenced [declared_but_not_referenced]
                  double Qc,Q,f1,f2,delta,beta,na,e,k2;
                                                    ^

"./Test_capillary.c", line 11226: warning: variable "dl" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                   ^

"./Test_capillary.c", line 11226: warning: variable "alpha" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                      ^

"./Test_capillary.c", line 11226: warning: variable "n" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                            ^

"./Test_capillary.c", line 11226: warning: variable "knx" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                                           ^

"./Test_capillary.c", line 11226: warning: variable "knz" was declared but never referenced [declared_but_not_referenced]
      double l0,l1,dl,alpha,n,nx,ny,nz,s,k,knx,knz;
                                               ^

"./Test_capillary.c", line 13276: warning: variable "t" was declared but never referenced [declared_but_not_referenced]
    time_t  t;
            ^

"./Test_capillary.c", line 13277: warning: variable "ct" was set but never used [set_but_not_used]
    clock_t ct;
            ^

"./Test_capillary.c", line 1505: warning: variable "mcstartdate" was set but never used [set_but_not_used]
  static   long mcstartdate            = 0; /* start simulation time */
                ^

"./Test_capillary.c", line 2925: warning: function "strcpy_valid" was declared but never referenced [declared_but_not_referenced]
  static char *strcpy_valid(char *valid, char *original)
               ^

mcgenstate:
    100, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar:
    114, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar_void:
    148, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void:
    174, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void_array:
    198, Generating acc routine seq
         Generating NVIDIA GPU code
particle_restore:
    209, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getuservar_byid:
    218, Generating acc routine seq
         Generating NVIDIA GPU code
particle_uservar_init:
    229, Generating acc routine seq
         Generating NVIDIA GPU code
noprintf:
   1553, Generating acc routine seq
         Generating NVIDIA GPU code
str_comp:
   1557, Generating acc routine seq
         Generating NVIDIA GPU code
str_len:
   1566, Generating acc routine seq
         Generating NVIDIA GPU code
mcget_ncount:
   4189, Generating acc routine seq
         Generating NVIDIA GPU code
coords_set:
   4620, Generating acc routine seq
         Generating NVIDIA GPU code
coords_get:
   4631, Generating acc routine seq
         Generating NVIDIA GPU code
coords_add:
   4640, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sub:
   4652, Generating acc routine seq
         Generating NVIDIA GPU code
coords_neg:
   4664, Generating acc routine seq
         Generating NVIDIA GPU code
coords_scale:
   4674, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sp:
   4684, Generating acc routine seq
         Generating NVIDIA GPU code
coords_xp:
   4692, Generating acc routine seq
         Generating NVIDIA GPU code
coords_len:
   4702, Generating acc routine seq
         Generating NVIDIA GPU code
coords_print:
   4724, Generating acc routine seq
         Generating NVIDIA GPU code
coords_norm:
   4731, Generating acc routine seq
         Generating NVIDIA GPU code
rot_set_rotation:
   4777, Generating acc routine seq
         Generating NVIDIA GPU code
rot_test_identity:
   4812, Generating acc routine seq
         Generating NVIDIA GPU code
rot_mul:
   4823, Generating acc routine seq
         Generating NVIDIA GPU code
rot_copy:
   4840, Generating acc routine seq
         Generating NVIDIA GPU code
rot_transpose:
   4851, Generating acc routine seq
         Generating NVIDIA GPU code
rot_apply:
   4867, Generating acc routine seq
         Generating NVIDIA GPU code
vec_prod_func:
   4896, Generating acc routine seq
         Generating NVIDIA GPU code
scalar_prod:
   4907, Generating acc routine seq
         Generating NVIDIA GPU code
norm_func:
   4911, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange:
   5088, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange_polarisation:
   5119, Generating acc routine seq
         Generating NVIDIA GPU code
normal_vec:
   5136, Generating acc routine seq
         Generating NVIDIA GPU code
solve_2nd_order:
   5235, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_circle:
   5319, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_angular:
   5385, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_real:
   5462, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_srandom:
   5734, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_random:
   5746, Generating acc routine seq
         Generating NVIDIA GPU code
_hash:
   5778, Generating acc routine seq
         Generating NVIDIA GPU code
_randnorm2:
   5819, Generating acc routine seq
         Generating NVIDIA GPU code
_randtriangle:
   5830, Generating acc routine seq
         Generating NVIDIA GPU code
_rand01:
   5835, Generating acc routine seq
         Generating NVIDIA GPU code
_randpm1:
   5843, Generating acc routine seq
         Generating NVIDIA GPU code
_rand0max:
   5851, Generating acc routine seq
         Generating NVIDIA GPU code
_randminmax:
   5858, Generating acc routine seq
         Generating NVIDIA GPU code
mcsetstate:
   6521, Generating acc routine seq
         Generating NVIDIA GPU code
mcgetstate:
   6554, Generating acc routine seq
         Generating NVIDIA GPU code
inside_rectangle:
   6615, Generating acc routine seq
         Generating NVIDIA GPU code
box_intersect:
   6631, Generating acc routine seq
         Generating NVIDIA GPU code
cylinder_intersect:
   6717, Generating acc routine seq
         Generating NVIDIA GPU code
sphere_intersect:
   6785, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Index:
   7933, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value:
   8001, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value2d:
   8080, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d:
   8548, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d_nearest:
   8564, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp2d:
   8582, Generating acc routine seq
         Generating NVIDIA GPU code
init:
  10762, Generating update device(_emon_zm_var,_psd1_var,_Origin_var,_tube_var,_tube_out_var,_psd_pre_var,_psd04_var,_instrument_var,_psd00_var,_psd01_var,_psd02_var,_psd03_var,_psd14_var,_psd0_var,_psd10_var,_psd11_var,_psd12_var,_psd13_var,_emon_pre_var,_emon_var,_generic_source_var)
class_Progress_bar_trace:
  10803, Generating acc routine seq
         Generating NVIDIA GPU code
class_Source_flat_trace:
  10901, Generating acc routine seq
         Generating NVIDIA GPU code
class_PSD_monitor_trace:
  11038, Generating acc routine seq
         Generating NVIDIA GPU code
class_E_monitor_trace:
  11129, Generating acc routine seq
         Generating NVIDIA GPU code
class_Capillary_trace:
  11204, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace:
  11395, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace_all:
  11864, Generating implicit firstprivate(gpu_innerloop)
         Generating NVIDIA GPU code
      11878, #pragma acc loop gang(numgangs), vector(vecsize) /* blockIdx.x threadIdx.x */
  11864, Local memory used for .inl_particle_17695,particleN,.inl_.inl_mcphoton_0_17711,.inl_.X1880_17713,.inl_.inl_.X2080_13_17712
  11878, Generating implicit firstprivate(seed,_particle)
finally:
  12676, Generating update self(_emon_zm_var,_psd1_var,_Origin_var,_tube_var,_tube_out_var,_psd_pre_var,_psd04_var,_instrument_var,_psd00_var,_psd01_var,_psd02_var,_psd03_var,_psd14_var,_psd0_var,_psd10_var,_psd11_var,_psd12_var,_psd13_var,_emon_pre_var,_emon_var,_generic_source_var)
mcenabletrace:
   5978, Generating update device(mcdotrace)
DEBUG: CMD: nvc finished
INFO: ===