INFO: No output directory specified (--dir)
INFO: Using directory: "Pump_probe_solvent_20250514_111156"
INFO: Regenerating c-file: Pump_probe_solvent.c
DEBUG: CMD: /home/willend/micromamba/bin/mcxtrace -t -o ./Pump_probe_solvent.c Pump_probe_solvent.instr
CFLAGS=
            
-----------------------------------------------------------

Generating single GPU kernel or single CPU section layout: 

-----------------------------------------------------------

Generating GPU/CPU -DFUNNEL layout:

-----------------------------------------------------------
DEBUG: CMD: /home/willend/micromamba/bin/mcxtrace finished
INFO: Recompiling: ./Pump_probe_solvent.out
DEBUG: CMD: nvc -o ./Pump_probe_solvent.out ./Pump_probe_solvent.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/willend/micromamba/lib -Wl,-rpath-link,/home/willend/micromamba/lib -L/home/willend/micromamba/lib -mtune=haswell -fPIC -O2 -isystem /home/willend/micromamba/include -fast -Minfo=accel -acc=gpu -gpu=mem:managed -DOPENACC
"./Pump_probe_solvent.c", line 4574: warning: variable "num" was declared but never referenced [declared_but_not_referenced]
          int num = 3;
              ^

Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>"

"./Pump_probe_solvent.c", line 6275: warning: variable "status" was set but never used [set_but_not_used]
        int status;
            ^

"./Pump_probe_solvent.c", line 6726: warning: variable "ret" was declared but never referenced [declared_but_not_referenced]
    int ret=1,stat=0,plane_stat=0;
        ^

"./Pump_probe_solvent.c", line 6899: warning: variable "D" was declared but never referenced [declared_but_not_referenced]
    double A,B,C,D,k;
                 ^

"/usr/include/math.h", line 30: warning: #warning directive: A macro called log was already defined when <math.h> was included. [warning_directive]
  # warning A macro called log was already defined when <math.h> was included.
    ^

"/usr/include/math.h", line 31: warning: #warning directive: This will cause compilation problems. [warning_directive]
  # warning This will cause compilation problems.
    ^

"./Pump_probe_solvent.c", line 8963: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i;
          ^

"./Pump_probe_solvent.c", line 9347: warning: integer conversion resulted in a change of sign [integer_sign_change]
      Vars->OFF_polyidx       = -1;
                                ^

"./Pump_probe_solvent.c", line 10447: warning: variable "ratio" was set but never used [set_but_not_used]
      double  ratio;
              ^

"./Pump_probe_solvent.c", line 10976: warning: variable "y0" is used before its value is set [used_before_set]
              if (y0 < ymin) y0=ymin; 
                  ^

"./Pump_probe_solvent.c", line 10978: warning: variable "y1" is used before its value is set [used_before_set]
              if (y1 < ymin) y1=ymin; 
                  ^

"./Pump_probe_solvent.c", line 11353: warning: variable "minx" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
          ^

"./Pump_probe_solvent.c", line 11353: warning: variable "maxx" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                       ^

"./Pump_probe_solvent.c", line 11353: warning: variable "miny" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                     ^

"./Pump_probe_solvent.c", line 11353: warning: variable "maxy" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                                  ^

"./Pump_probe_solvent.c", line 11353: warning: variable "minz" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                                                ^

"./Pump_probe_solvent.c", line 11353: warning: variable "maxz" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                                                             ^

"./Pump_probe_solvent.c", line 11710: warning: variable "plane_Eq" was declared but never referenced [declared_but_not_referenced]
    double plane_Eq [4];
           ^

"./Pump_probe_solvent.c", line 13051: warning: variable "tc2" was set but never used [set_but_not_used]
      Coords tc1, tc2;
                  ^

"./Pump_probe_solvent.c", line 13039: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 1;
        ^

"./Pump_probe_solvent.c", line 13096: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 2;
        ^

"./Pump_probe_solvent.c", line 13184: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 3;
        ^

"./Pump_probe_solvent.c", line 13252: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 4;
        ^

"./Pump_probe_solvent.c", line 13320: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 5;
        ^

"./Pump_probe_solvent.c", line 13369: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 6;
        ^

"./Pump_probe_solvent.c", line 13435: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 7;
        ^

"./Pump_probe_solvent.c", line 13484: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 8;
        ^

"./Pump_probe_solvent.c", line 13556: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 9;
        ^

"./Pump_probe_solvent.c", line 13661: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 10;
        ^

"./Pump_probe_solvent.c", line 13766: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 11;
        ^

"./Pump_probe_solvent.c", line 13815: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 12;
        ^

"./Pump_probe_solvent.c", line 13879: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 13;
        ^

"./Pump_probe_solvent.c", line 13993: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 14;
        ^

"./Pump_probe_solvent.c", line 14107: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 15;
        ^

"./Pump_probe_solvent.c", line 14179: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 16;
        ^

"./Pump_probe_solvent.c", line 14343: warning: variable "status" was set but never used [set_but_not_used]
      int status=0;
          ^

"./Pump_probe_solvent.c", line 14411: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i;
          ^

"./Pump_probe_solvent.c", line 14464: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i;
          ^

"./Pump_probe_solvent.c", line 14550: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i,j;
          ^

"./Pump_probe_solvent.c", line 14550: warning: variable "j" was declared but never referenced [declared_but_not_referenced]
      int i,j;
            ^

"./Pump_probe_solvent.c", line 14551: warning: variable "p1" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
              ^

"./Pump_probe_solvent.c", line 14551: warning: variable "p2" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                  ^

"./Pump_probe_solvent.c", line 14551: warning: variable "p3" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                      ^

"./Pump_probe_solvent.c", line 14631: warning: variable "status" was set but never used [set_but_not_used]
    int status;
        ^

"./Pump_probe_solvent.c", line 14836: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
    int i,j;
        ^

"./Pump_probe_solvent.c", line 14836: warning: variable "j" was declared but never referenced [declared_but_not_referenced]
    int i,j;
          ^

"./Pump_probe_solvent.c", line 15691: warning: variable "k" was declared but never referenced [declared_but_not_referenced]
      int i,j,k;
              ^

"./Pump_probe_solvent.c", line 15692: warning: variable "e" was declared but never referenced [declared_but_not_referenced]
      double e,p2;
             ^

"./Pump_probe_solvent.c", line 15870: warning: variable "rr" was declared but never referenced [declared_but_not_referenced]
        double qq,alpha,ff2,rr;
                            ^

"./Pump_probe_solvent.c", line 15853: warning: variable "pmul" was declared but never referenced [declared_but_not_referenced]
      double pmul=1,p_s;
             ^

"./Pump_probe_solvent.c", line 18406: warning: variable "t" was declared but never referenced [declared_but_not_referenced]
    time_t  t;
            ^

"./Pump_probe_solvent.c", line 18407: warning: variable "ct" was set but never used [set_but_not_used]
    clock_t ct;
            ^

"./Pump_probe_solvent.c", line 1511: warning: variable "mcstartdate" was set but never used [set_but_not_used]
  static   long mcstartdate            = 0; /* start simulation time */
                ^

"./Pump_probe_solvent.c", line 2931: warning: function "strcpy_valid" was declared but never referenced [declared_but_not_referenced]
  static char *strcpy_valid(char *valid, char *original)
               ^

mcgenstate:
    101, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar:
    115, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar_void:
    150, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void:
    177, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void_array:
    202, Generating acc routine seq
         Generating NVIDIA GPU code
particle_restore:
    213, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getuservar_byid:
    222, Generating acc routine seq
         Generating NVIDIA GPU code
particle_uservar_init:
    234, Generating acc routine seq
         Generating NVIDIA GPU code
noprintf:
   1559, Generating acc routine seq
         Generating NVIDIA GPU code
str_comp:
   1563, Generating acc routine seq
         Generating NVIDIA GPU code
str_len:
   1572, Generating acc routine seq
         Generating NVIDIA GPU code
mcget_ncount:
   4195, Generating acc routine seq
         Generating NVIDIA GPU code
coords_set:
   4626, Generating acc routine seq
         Generating NVIDIA GPU code
coords_get:
   4637, Generating acc routine seq
         Generating NVIDIA GPU code
coords_add:
   4646, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sub:
   4658, Generating acc routine seq
         Generating NVIDIA GPU code
coords_neg:
   4670, Generating acc routine seq
         Generating NVIDIA GPU code
coords_scale:
   4680, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sp:
   4690, Generating acc routine seq
         Generating NVIDIA GPU code
coords_xp:
   4698, Generating acc routine seq
         Generating NVIDIA GPU code
coords_len:
   4708, Generating acc routine seq
         Generating NVIDIA GPU code
coords_print:
   4730, Generating acc routine seq
         Generating NVIDIA GPU code
coords_norm:
   4737, Generating acc routine seq
         Generating NVIDIA GPU code
rot_set_rotation:
   4783, Generating acc routine seq
         Generating NVIDIA GPU code
rot_test_identity:
   4818, Generating acc routine seq
         Generating NVIDIA GPU code
rot_mul:
   4829, Generating acc routine seq
         Generating NVIDIA GPU code
rot_copy:
   4846, Generating acc routine seq
         Generating NVIDIA GPU code
rot_transpose:
   4857, Generating acc routine seq
         Generating NVIDIA GPU code
rot_apply:
   4873, Generating acc routine seq
         Generating NVIDIA GPU code
vec_prod_func:
   4902, Generating acc routine seq
         Generating NVIDIA GPU code
scalar_prod:
   4913, Generating acc routine seq
         Generating NVIDIA GPU code
norm_func:
   4917, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange:
   5094, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange_polarisation:
   5125, Generating acc routine seq
         Generating NVIDIA GPU code
normal_vec:
   5142, Generating acc routine seq
         Generating NVIDIA GPU code
solve_2nd_order:
   5241, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_circle:
   5325, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_angular:
   5391, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_real:
   5468, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_srandom:
   5740, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_random:
   5752, Generating acc routine seq
         Generating NVIDIA GPU code
_hash:
   5784, Generating acc routine seq
         Generating NVIDIA GPU code
_randnorm2:
   5825, Generating acc routine seq
         Generating NVIDIA GPU code
_randtriangle:
   5836, Generating acc routine seq
         Generating NVIDIA GPU code
_rand01:
   5841, Generating acc routine seq
         Generating NVIDIA GPU code
_randpm1:
   5849, Generating acc routine seq
         Generating NVIDIA GPU code
_rand0max:
   5857, Generating acc routine seq
         Generating NVIDIA GPU code
_randminmax:
   5864, Generating acc routine seq
         Generating NVIDIA GPU code
mcsetstate:
   6527, Generating acc routine seq
         Generating NVIDIA GPU code
mcgetstate:
   6560, Generating acc routine seq
         Generating NVIDIA GPU code
inside_rectangle:
   6621, Generating acc routine seq
         Generating NVIDIA GPU code
box_intersect:
   6637, Generating acc routine seq
         Generating NVIDIA GPU code
cylinder_intersect:
   6723, Generating acc routine seq
         Generating NVIDIA GPU code
sphere_intersect:
   6791, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Index:
   7953, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value:
   8021, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value2d:
   8100, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d:
   8568, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d_nearest:
   8584, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp2d:
   8602, Generating acc routine seq
         Generating NVIDIA GPU code
Monitor_nD_Trace:
  10032, Generating acc routine seq
         Generating NVIDIA GPU code
off_F:
  11310, Generating acc routine seq
         Generating NVIDIA GPU code
off_sign:
  11315, Generating acc routine seq
         Generating NVIDIA GPU code
off_normal:
  11325, Generating acc routine seq
         Generating NVIDIA GPU code
off_pnpoly:
  11351, Generating acc routine seq
         Generating NVIDIA GPU code
off_intersectPoly:
  11414, Generating acc routine seq
         Generating NVIDIA GPU code
off_init_planes:
  11545, Generating acc routine seq
         Generating NVIDIA GPU code
off_clip_3D_mod:
  11590, Generating acc routine seq
         Generating NVIDIA GPU code
off_clip_3D_mod_grav:
  11707, Generating acc routine seq
         Generating NVIDIA GPU code
off_compare:
  11825, Generating acc routine seq
         Generating NVIDIA GPU code
off_cleanDouble:
  11837, Generating acc routine seq
         Generating NVIDIA GPU code
off_cleanInOut:
  11872, Generating acc routine seq
         Generating NVIDIA GPU code
Min_int:
  12123, Generating acc routine seq
         Generating NVIDIA GPU code
merge:
  12130, Generating acc routine seq
         Generating NVIDIA GPU code
p_to_quadratic:
  12234, Generating implicit acc routine seq
         Generating acc routine seq
         Generating NVIDIA GPU code
quadraticSolve:
  12249, Generating implicit acc routine seq
         Generating acc routine seq
         Generating NVIDIA GPU code
off_intersect_all:
  12303, Generating acc routine seq
         Generating NVIDIA GPU code
off_intersect:
  12420, Generating acc routine seq
         Generating NVIDIA GPU code
off_x_intersect:
  12442, Generating acc routine seq
         Generating NVIDIA GPU code
init:
  15149, Generating update device(_src_var,_solvent_var,_det_ccd_var,_instrument_var,_Origin_var,_psd4pi_var,_pulse_shape_chop_var,_sample_var,_sample_pos_var,_sampsd_var,_bananapsd_var,_lmon_src_var,_ap1_var,_beamstop_var,_det_ccd_rad1_var,_det_ccd_rad_var,_emon_src_var)
class_Progress_bar_trace:
  15190, Generating acc routine seq
         Generating NVIDIA GPU code
class_Source_flat_trace:
  15281, Generating acc routine seq
         Generating NVIDIA GPU code
class_E_monitor_trace:
  15418, Generating acc routine seq
         Generating NVIDIA GPU code
class_L_monitor_trace:
  15493, Generating acc routine seq
         Generating NVIDIA GPU code
class_Arm_trace:
  15567, Generating acc routine seq
         Generating NVIDIA GPU code
class_Chopper_simple_trace:
  15604, Generating acc routine seq
         Generating NVIDIA GPU code
class_PSD_monitor_trace:
  15671, Generating acc routine seq
         Generating NVIDIA GPU code
class_Molecule_2state_trace:
  15762, Generating acc routine seq
         Generating NVIDIA GPU code
class_PSD_monitor_4PI_trace:
  16012, Generating acc routine seq
         Generating NVIDIA GPU code
class_Monitor_nD_trace:
  16085, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace:
  16310, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace_all:
  16687, Generating implicit firstprivate(gpu_innerloop)
         Generating NVIDIA GPU code
      16701, #pragma acc loop gang(numgangs), vector(vecsize) /* blockIdx.x threadIdx.x */
  16687, Local memory used for .inl_particle_18359,particleN,.inl_.inl_mcphoton_0_18375,.inl_.X2178_18377,.inl_.inl_.X2381_13_18376
  16701, Generating implicit firstprivate(seed,_particle)
finally:
  17623, Generating update self(_src_var,_solvent_var,_det_ccd_var,_instrument_var,_Origin_var,_psd4pi_var,_pulse_shape_chop_var,_sample_var,_sample_pos_var,_sampsd_var,_bananapsd_var,_lmon_src_var,_ap1_var,_beamstop_var,_det_ccd_rad1_var,_det_ccd_rad_var,_emon_src_var)
mcenabletrace:
   5984, Generating update device(mcdotrace)
DEBUG: CMD: nvc finished
INFO: ===