INFO: No output directory specified (--dir)
INFO: Using directory: "JJ_SAXS_20250514_113700"
INFO: Regenerating c-file: JJ_SAXS.c
DEBUG: CMD: /home/willend/micromamba/bin/mcxtrace -t -o ./JJ_SAXS.c JJ_SAXS.instr
CFLAGS=
      
-----------------------------------------------------------

Generating single GPU kernel or single CPU section layout: 

-----------------------------------------------------------

Generating GPU/CPU -DFUNNEL layout:

-----------------------------------------------------------
DEBUG: CMD: /home/willend/micromamba/bin/mcxtrace finished
INFO: Recompiling: ./JJ_SAXS.out
DEBUG: CMD: nvc -o ./JJ_SAXS.out ./JJ_SAXS.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/willend/micromamba/lib -Wl,-rpath-link,/home/willend/micromamba/lib -L/home/willend/micromamba/lib -mtune=haswell -fPIC -O2 -isystem /home/willend/micromamba/include -fast -Minfo=accel -acc=gpu -gpu=mem:managed -DOPENACC
"./JJ_SAXS.c", line 4561: warning: variable "num" was declared but never referenced [declared_but_not_referenced]
          int num = 3;
              ^

Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>"

"./JJ_SAXS.c", line 6262: warning: variable "status" was set but never used [set_but_not_used]
        int status;
            ^

"./JJ_SAXS.c", line 6713: warning: variable "ret" was declared but never referenced [declared_but_not_referenced]
    int ret=1,stat=0,plane_stat=0;
        ^

"./JJ_SAXS.c", line 6886: warning: variable "D" was declared but never referenced [declared_but_not_referenced]
    double A,B,C,D,k;
                 ^

"/usr/include/math.h", line 30: warning: #warning directive: A macro called log was already defined when <math.h> was included. [warning_directive]
  # warning A macro called log was already defined when <math.h> was included.
    ^

"/usr/include/math.h", line 31: warning: #warning directive: This will cause compilation problems. [warning_directive]
  # warning This will cause compilation problems.
    ^

"./JJ_SAXS.c", line 8740: warning: conversion from pointer to smaller integer [pointer_conversion_loses_bits]
            int N=(unsigned int)((double **) pars)[0];
                  ^

"./JJ_SAXS.c", line 8718: warning: variable "status" was declared but never referenced [declared_but_not_referenced]
    int status;
        ^

"./JJ_SAXS.c", line 8829: warning: variable "status" was set but never used [set_but_not_used]
      int status;
          ^

"./JJ_SAXS.c", line 9028: warning: variable "R" was declared but never referenced [declared_but_not_referenced]
      double b_mu,R;
                  ^

"./JJ_SAXS.c", line 9088: warning: variable "k2" is used before its value is set [used_before_set]
      qpd=csqrt(q*q - 8*k2* *(pp->delta) + I*8*k2* *(pp->beta));
                        ^

"./JJ_SAXS.c", line 9083: warning: variable "qinf" was declared but never referenced [declared_but_not_referenced]
      double complex qinf;
                     ^

"./JJ_SAXS.c", line 9106: warning: variable "qinf" was declared but never referenced [declared_but_not_referenced]
      double complex qinf;
                     ^

"./JJ_SAXS.c", line 9557: warning: variable "tc2" was set but never used [set_but_not_used]
      Coords tc1, tc2;
                  ^

"./JJ_SAXS.c", line 9545: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 1;
        ^

"./JJ_SAXS.c", line 9602: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 2;
        ^

"./JJ_SAXS.c", line 9690: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 3;
        ^

"./JJ_SAXS.c", line 9762: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 4;
        ^

"./JJ_SAXS.c", line 9811: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 5;
        ^

"./JJ_SAXS.c", line 9879: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 6;
        ^

"./JJ_SAXS.c", line 9928: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 7;
        ^

"./JJ_SAXS.c", line 10002: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 8;
        ^

"./JJ_SAXS.c", line 10074: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 9;
        ^

"./JJ_SAXS.c", line 10148: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 10;
        ^

"./JJ_SAXS.c", line 10222: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 11;
        ^

"./JJ_SAXS.c", line 10294: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 12;
        ^

"./JJ_SAXS.c", line 10458: warning: variable "status" was set but never used [set_but_not_used]
      int status=0;
          ^

"./JJ_SAXS.c", line 10528: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i,j;
          ^

"./JJ_SAXS.c", line 10528: warning: variable "j" was declared but never referenced [declared_but_not_referenced]
      int i,j;
            ^

"./JJ_SAXS.c", line 10529: warning: variable "p1" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
              ^

"./JJ_SAXS.c", line 10529: warning: variable "p2" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                  ^

"./JJ_SAXS.c", line 10529: warning: variable "p3" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                      ^

"./JJ_SAXS.c", line 10585: warning: variable "status" was set but never used [set_but_not_used]
    int status;
        ^

"./JJ_SAXS.c", line 11017: warning: variable "k" was declared but never referenced [declared_but_not_referenced]
      int i,j,k;
              ^

"./JJ_SAXS.c", line 11018: warning: variable "e" was declared but never referenced [declared_but_not_referenced]
      double e,p2;
             ^

"./JJ_SAXS.c", line 12714: warning: variable "t" was declared but never referenced [declared_but_not_referenced]
    time_t  t;
            ^

"./JJ_SAXS.c", line 12715: warning: variable "ct" was set but never used [set_but_not_used]
    clock_t ct;
            ^

"./JJ_SAXS.c", line 1498: warning: variable "mcstartdate" was set but never used [set_but_not_used]
  static   long mcstartdate            = 0; /* start simulation time */
                ^

"./JJ_SAXS.c", line 2918: warning: function "strcpy_valid" was declared but never referenced [declared_but_not_referenced]
  static char *strcpy_valid(char *valid, char *original)
               ^

mcgenstate:
     98, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar:
    112, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar_void:
    145, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void:
    170, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void_array:
    193, Generating acc routine seq
         Generating NVIDIA GPU code
particle_restore:
    204, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getuservar_byid:
    213, Generating acc routine seq
         Generating NVIDIA GPU code
particle_uservar_init:
    223, Generating acc routine seq
         Generating NVIDIA GPU code
noprintf:
   1546, Generating acc routine seq
         Generating NVIDIA GPU code
str_comp:
   1550, Generating acc routine seq
         Generating NVIDIA GPU code
str_len:
   1559, Generating acc routine seq
         Generating NVIDIA GPU code
mcget_ncount:
   4182, Generating acc routine seq
         Generating NVIDIA GPU code
coords_set:
   4613, Generating acc routine seq
         Generating NVIDIA GPU code
coords_get:
   4624, Generating acc routine seq
         Generating NVIDIA GPU code
coords_add:
   4633, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sub:
   4645, Generating acc routine seq
         Generating NVIDIA GPU code
coords_neg:
   4657, Generating acc routine seq
         Generating NVIDIA GPU code
coords_scale:
   4667, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sp:
   4677, Generating acc routine seq
         Generating NVIDIA GPU code
coords_xp:
   4685, Generating acc routine seq
         Generating NVIDIA GPU code
coords_len:
   4695, Generating acc routine seq
         Generating NVIDIA GPU code
coords_print:
   4717, Generating acc routine seq
         Generating NVIDIA GPU code
coords_norm:
   4724, Generating acc routine seq
         Generating NVIDIA GPU code
rot_set_rotation:
   4770, Generating acc routine seq
         Generating NVIDIA GPU code
rot_test_identity:
   4805, Generating acc routine seq
         Generating NVIDIA GPU code
rot_mul:
   4816, Generating acc routine seq
         Generating NVIDIA GPU code
rot_copy:
   4833, Generating acc routine seq
         Generating NVIDIA GPU code
rot_transpose:
   4844, Generating acc routine seq
         Generating NVIDIA GPU code
rot_apply:
   4860, Generating acc routine seq
         Generating NVIDIA GPU code
vec_prod_func:
   4889, Generating acc routine seq
         Generating NVIDIA GPU code
scalar_prod:
   4900, Generating acc routine seq
         Generating NVIDIA GPU code
norm_func:
   4904, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange:
   5081, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange_polarisation:
   5112, Generating acc routine seq
         Generating NVIDIA GPU code
normal_vec:
   5129, Generating acc routine seq
         Generating NVIDIA GPU code
solve_2nd_order:
   5228, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_circle:
   5312, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_angular:
   5378, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_real:
   5455, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_srandom:
   5727, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_random:
   5739, Generating acc routine seq
         Generating NVIDIA GPU code
_hash:
   5771, Generating acc routine seq
         Generating NVIDIA GPU code
_randnorm2:
   5812, Generating acc routine seq
         Generating NVIDIA GPU code
_randtriangle:
   5823, Generating acc routine seq
         Generating NVIDIA GPU code
_rand01:
   5828, Generating acc routine seq
         Generating NVIDIA GPU code
_randpm1:
   5836, Generating acc routine seq
         Generating NVIDIA GPU code
_rand0max:
   5844, Generating acc routine seq
         Generating NVIDIA GPU code
_randminmax:
   5851, Generating acc routine seq
         Generating NVIDIA GPU code
mcsetstate:
   6514, Generating acc routine seq
         Generating NVIDIA GPU code
mcgetstate:
   6547, Generating acc routine seq
         Generating NVIDIA GPU code
inside_rectangle:
   6608, Generating acc routine seq
         Generating NVIDIA GPU code
box_intersect:
   6624, Generating acc routine seq
         Generating NVIDIA GPU code
cylinder_intersect:
   6710, Generating acc routine seq
         Generating NVIDIA GPU code
sphere_intersect:
   6778, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Index:
   7930, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value:
   7998, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value2d:
   8077, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d:
   8545, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d_nearest:
   8561, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp2d:
   8579, Generating acc routine seq
         Generating NVIDIA GPU code
reflec_coating:
   9012, Generating acc routine seq
         Generating NVIDIA GPU code
reflec_bare:
   9044, Generating acc routine seq
         Generating NVIDIA GPU code
reflec_kinematic:
   9048, Generating acc routine seq
         Generating NVIDIA GPU code
reflec_q_prmtc:
   9058, Generating acc routine seq
         Generating NVIDIA GPU code
reflec_eth_prmtc:
   9070, Generating acc routine seq
         Generating NVIDIA GPU code
reflec_parratt:
   9080, Generating acc routine seq
         Generating NVIDIA GPU code
parrat_reflec_bulk:
   9103, Generating acc routine seq
         Generating NVIDIA GPU code
refleccq:
   9127, Generating acc routine seq
         Generating NVIDIA GPU code
reflecq:
   9178, Generating acc routine seq
         Generating NVIDIA GPU code
init:
  10728, Generating update device(_Origin_var,_pinhole3_var,_instrument_var,_optic_arm_var,_apparent_source_var,_optic_var,_psd00_var,_pinhole1_var,_pinhole2_var,_psd01_var,_psd1_var,_psd03_var,_beam_tube_axis_var)
class_Progress_bar_trace:
  10769, Generating acc routine seq
         Generating NVIDIA GPU code
class_Source_flat_trace:
  10860, Generating acc routine seq
         Generating NVIDIA GPU code
class_PSD_monitor_trace:
  10997, Generating acc routine seq
         Generating NVIDIA GPU code
class_Mirror_curved_trace:
  11088, Generating acc routine seq
         Generating NVIDIA GPU code
class_Slit_trace:
  11202, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace:
  11276, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace_all:
  11551, Generating implicit firstprivate(gpu_innerloop)
         Generating NVIDIA GPU code
      11565, #pragma acc loop gang(numgangs), vector(vecsize) /* blockIdx.x threadIdx.x */
  11551, Local memory used for .inl_particle_14214,particleN,.inl_.inl_mcphoton_0_14230,.inl_.X1929_14232,.inl_.inl_.X2133_13_14231
  11565, Generating implicit firstprivate(seed,_particle)
finally:
  12152, Generating update self(_Origin_var,_pinhole3_var,_instrument_var,_optic_arm_var,_apparent_source_var,_optic_var,_psd00_var,_pinhole1_var,_pinhole2_var,_psd01_var,_psd1_var,_psd03_var,_beam_tube_axis_var)
mcenabletrace:
   5971, Generating update device(mcdotrace)
DEBUG: CMD: nvc finished
INFO: ===