INFO: No output directory specified (--dir)
INFO: Using directory: "NECSA_MIXRAD_Nikon_Tomo_20250514_145923"
INFO: Regenerating c-file: NECSA_MIXRAD_Nikon_Tomo.c
DEBUG: CMD: /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/bin/mcxtrace -t -o ./NECSA_MIXRAD_Nikon_Tomo.c NECSA_MIXRAD_Nikon_Tomo.instr
CFLAGS=  @XRLFLAGS@ -DUSE_OFF  -DFUNNEL 
      
-----------------------------------------------------------

Generating single GPU kernel or single CPU section layout: 

-----------------------------------------------------------

Generating GPU/CPU -DFUNNEL layout:
Component Sample is NOACC, CPUONLY=1
-> FUNNEL mode enabled, SPLIT within buffer.
-> CPU section from component Sample
-> GPU kernel from component Detector

-----------------------------------------------------------
DEBUG: CMD: /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/bin/mcxtrace finished
INFO: Recompiling: ./NECSA_MIXRAD_Nikon_Tomo.out
   --> pointing path miniconda3/lib to /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib
   --> pointing path miniconda3/lib to /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib
   --> pointing path miniconda3/include to /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include
DEBUG: CMD: nvc -o ./NECSA_MIXRAD_Nikon_Tomo.out ./NECSA_MIXRAD_Nikon_Tomo.c -lm -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -Wl,-rpath-link,/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -L/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -mtune=haswell -fPIC -O2 -isystem /u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include -fast -Minfo=accel -acc=gpu -gpu=mem:managed -DOPENACC -Wl,-rpath,/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -L/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/lib -lxrl -I/u/data/pkwi/McXtrace/mcxtrace/3.x-dev/miniconda3/include -DUSE_OFF -DFUNNEL
"./NECSA_MIXRAD_Nikon_Tomo.c", line 85: warning: Routine "mcgenstate" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  _class_particle mcgenstate(void);
                  ^

Remark: individual warnings can be suppressed with "--diag_suppress <warning-name>"

"./NECSA_MIXRAD_Nikon_Tomo.c", line 87: warning: Routine "mcsetstate" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  _class_particle mcsetstate(double x, double y, double z, double kx, double ky, double kz,
                  ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 90: warning: Routine "mcgetstate" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  _class_particle mcgetstate(_class_particle mcphoton, double *x, double *y, double *z, double *kx, double *ky, double *kz,
                  ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 105: warning: Routine "particle_getvar" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double particle_getvar(_class_particle *p, char *name, int *suc);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 109: warning: Routine "str_comp" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int str_comp(char *str1, char *str2);
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 138: warning: Routine "particle_getvar_void" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void* particle_getvar_void(_class_particle *p, char *name, int *suc);
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 109: warning: Routine "str_comp" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int str_comp(char *str1, char *str2);
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 168: warning: Routine "particle_setvar_void" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int particle_setvar_void(_class_particle *, char *, void*);
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 191: warning: Routine "particle_setvar_void_array" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int particle_setvar_void_array(_class_particle *, char *, void*, int);
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 202: warning: Routine "particle_restore" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void particle_restore(_class_particle *p, _class_particle *p0);
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 213: warning: Routine "particle_getuservar_byid" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double particle_getuservar_byid(_class_particle *p, int id, int *suc){
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 223: warning: Routine "particle_uservar_init" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void particle_uservar_init(_class_particle *p){
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 295: warning: Routine "noprintf" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int noprintf();
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 297: warning: Routine "str_len" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  size_t str_len(const char *s);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 647: warning: Routine "mcget_ncount" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  unsigned long long int mcget_ncount(void);            /* wrapper to set mcncount */
                         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 868: warning: Routine "_randnorm2" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double _randnorm2(randstate_t* state);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 885: warning: Routine "kiss_srandom" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  uint64_t *kiss_srandom(uint64_t state[7], uint64_t seed);
            ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 887: warning: Routine "kiss_random" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  uint64_t kiss_random(uint64_t state[7]);
           ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 895: warning: Routine "_rand01" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double _rand01(randstate_t* state);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 897: warning: Routine "_randpm1" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double _randpm1(randstate_t* state);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 899: warning: Routine "_rand0max" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double _rand0max(double max, randstate_t* state);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 901: warning: Routine "_randminmax" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double _randminmax(double min, double max, randstate_t* state);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 903: warning: Routine "_randtriangle" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double _randtriangle(randstate_t* state);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 999: warning: Routine "coords_set" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  Coords coords_set(MCNUM x, MCNUM y, MCNUM z);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 1001: warning: Routine "coords_get" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  Coords coords_get(Coords a, MCNUM *x, MCNUM *y, MCNUM *z);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 1003: warning: Routine "coords_add" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  Coords coords_add(Coords a, Coords b);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 1005: warning: Routine "coords_sub" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  Coords coords_sub(Coords a, Coords b);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 1007: warning: Routine "coords_neg" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  Coords coords_neg(Coords a);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 1009: warning: Routine "coords_scale" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  Coords coords_scale(Coords b, double scale);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 1011: warning: Routine "coords_sp" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double coords_sp(Coords a, Coords b);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 1013: warning: Routine "coords_xp" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  Coords coords_xp(Coords b, Coords c);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 1015: warning: Routine "coords_len" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double coords_len(Coords a);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 4561: warning: variable "num" was declared but never referenced [declared_but_not_referenced]
          int num = 3;
              ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 5016: warning: variable "randstate" was declared but never referenced [declared_but_not_referenced]
      randstate_t randstate[7];
                  ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 4935: warning: variable "newlen" was declared but never referenced [declared_but_not_referenced]
    long newlen = 0;
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 6262: warning: variable "status" was set but never used [set_but_not_used]
        int status;
            ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 6713: warning: variable "ret" was declared but never referenced [declared_but_not_referenced]
    int ret=1,stat=0,plane_stat=0;
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 6886: warning: variable "D" was declared but never referenced [declared_but_not_referenced]
    double A,B,C,D,k;
                 ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 7135: warning: Routine "Table_Index" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double   Table_Index(t_Table Table,   long i, long j); /* get indexed value */
           ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 7137: warning: Routine "Table_Value" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double   Table_Value(t_Table Table, double X, long j); /* search X in 1st column and return interpolated value in j-column */
           ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 7144: warning: Routine "Table_Value2d" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double   Table_Value2d(t_Table Table, double X, double Y);    /* same as Table_Index with non-integer indices and 2d interpolation */
           ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 7164: warning: Routine "Table_Interp1d" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double Table_Interp1d(double x, double x1, double y1, double x2, double y2);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 7166: warning: Routine "Table_Interp1d_nearest" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double Table_Interp1d_nearest(double x, double x1, double y1, double x2, double y2);
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 7168: warning: Routine "Table_Interp2d" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double Table_Interp2d(double x, double y, double x1, double y1, double x2, double y2,
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8743: warning: Routine "off_intersect_all" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int off_intersect_all(double* t0, double* t3,
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8766: warning: Routine "off_intersect" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int off_intersect(double* t0, double* t3,
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8787: warning: Routine "off_x_intersect" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int off_x_intersect(double *l0,double *l3,
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8870: warning: Routine "off_F" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  double off_F(double x, double y,double z,double A,double B,double C,double D) {
         ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8875: warning: Routine "off_sign" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  char off_sign(double a) {
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8884: warning: Routine "off_normal" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void off_normal(Coords* n, polygon p)
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8910: warning: Routine "off_pnpoly" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int off_pnpoly(polygon p, Coords v)
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8913: warning: variable "minx" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
          ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8913: warning: variable "maxx" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8913: warning: variable "miny" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                     ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8913: warning: variable "maxy" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                                  ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8913: warning: variable "minz" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                                                ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8913: warning: variable "maxz" was declared but never referenced [declared_but_not_referenced]
    MCNUM minx=FLT_MAX,maxx=-FLT_MAX,miny=FLT_MAX,maxy=-FLT_MAX,minz=FLT_MAX,maxz=-FLT_MAX;
                                                                             ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 8973: warning: Routine "off_intersectPoly" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int off_intersectPoly(intersection *inter, Coords a, Coords b, polygon p)
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 9103: warning: Routine "off_init_planes" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void off_init_planes(Coords a, Coords b,
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 9147: warning: Routine "off_clip_3D_mod" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int off_clip_3D_mod(intersection* t, Coords a, Coords b,
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 9270: warning: variable "plane_Eq" was declared but never referenced [declared_but_not_referenced]
    double plane_Eq [4];
           ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 9384: warning: Routine "off_compare" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int off_compare (void const *a, void const *b)
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 9396: warning: Routine "off_cleanDouble" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int off_cleanDouble(intersection* t, int* t_size)
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 9431: warning: Routine "off_cleanInOut" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int off_cleanInOut(intersection* t, int* t_size)
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 9683: warning: Routine "Min_int" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  int Min_int(int x, int y) {
      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 9689: warning: Routine "merge" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void merge(intersection *arr, int l, int m, int r)
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 9750: warning: Routine "gpusort" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void gpusort(intersection *arr, int size)
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 10709: warning: variable "tc2" was set but never used [set_but_not_used]
      Coords tc1, tc2;
                  ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 10697: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 1;
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 10779: warning: variable "tc2" was set but never used [set_but_not_used]
      Coords tc1, tc2;
                  ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 10754: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 2;
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 10838: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 3;
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 10903: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 4;
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 10952: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 5;
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11021: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 6;
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11138: warning: variable "current_setpos_index" was declared but never referenced [declared_but_not_referenced]
    int current_setpos_index = 7;
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11284: warning: variable "status" was set but never used [set_but_not_used]
    int status,ii;
        ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11426: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i;
          ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11481: warning: variable "i" was declared but never referenced [declared_but_not_referenced]
      int i,j;
          ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11481: warning: variable "j" was declared but never referenced [declared_but_not_referenced]
      int i,j;
            ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11482: warning: variable "p1" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
              ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11482: warning: variable "p2" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                  ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11482: warning: variable "p3" was declared but never referenced [declared_but_not_referenced]
      double *p1,*p2,*p3;
                      ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11878: warning: Routine "class_Progress_bar_trace" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void class_Progress_bar_trace(_class_Progress_bar *_comp
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 11969: warning: Routine "class_Source_lab_trace" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void class_Source_lab_trace(_class_Source_lab *_comp
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 12007: warning: variable "x2" was declared but never referenced [declared_but_not_referenced]
    double x1,y1,z1,x2,y2,z2,r,e,k,pdir,pmul;
                    ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 12007: warning: variable "y2" was declared but never referenced [declared_but_not_referenced]
    double x1,y1,z1,x2,y2,z2,r,e,k,pdir,pmul;
                       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 12007: warning: variable "z2" was declared but never referenced [declared_but_not_referenced]
    double x1,y1,z1,x2,y2,z2,r,e,k,pdir,pmul;
                          ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 12159: warning: Routine "class_E_monitor_trace" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void class_E_monitor_trace(_class_E_monitor *_comp
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 12234: warning: Routine "class_PSD_monitor_trace" will be treated as sequential because its "routine" directive doesn't specify a level of parallelism [no_routine_type]
  void class_PSD_monitor_trace(_class_PSD_monitor *_comp
       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 12255: warning: variable "k" was declared but never referenced [declared_but_not_referenced]
      int i,j,k;
              ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 12256: warning: variable "e" was declared but never referenced [declared_but_not_referenced]
      double e,p2;
             ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 12546: warning: subscript out of range [subscript_out_of_range]
      xs[FLUORESCENCE]=xs[COMPTON]=xs[RAYLEIGH]=xs[TRANSMISSION]=sigma_barn=0;
                                                ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 12539: warning: variable "flag" was declared but never referenced [declared_but_not_referenced]
      int    flag=0;
             ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13763: warning: variable "x1" was declared but never referenced [declared_but_not_referenced]
    double x1,y1,z1,x2,y2,z2,width_2,height_2;
           ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13763: warning: variable "y1" was declared but never referenced [declared_but_not_referenced]
    double x1,y1,z1,x2,y2,z2,width_2,height_2;
              ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13763: warning: variable "z1" was declared but never referenced [declared_but_not_referenced]
    double x1,y1,z1,x2,y2,z2,width_2,height_2;
                 ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13763: warning: variable "x2" was declared but never referenced [declared_but_not_referenced]
    double x1,y1,z1,x2,y2,z2,width_2,height_2;
                    ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13763: warning: variable "y2" was declared but never referenced [declared_but_not_referenced]
    double x1,y1,z1,x2,y2,z2,width_2,height_2;
                       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13763: warning: variable "z2" was declared but never referenced [declared_but_not_referenced]
    double x1,y1,z1,x2,y2,z2,width_2,height_2;
                          ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13764: warning: variable "dx" was declared but never referenced [declared_but_not_referenced]
    double dx,dy,dz;
           ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13764: warning: variable "dy" was declared but never referenced [declared_but_not_referenced]
    double dx,dy,dz;
              ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13764: warning: variable "dz" was declared but never referenced [declared_but_not_referenced]
    double dx,dy,dz;
                 ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13766: warning: variable "d1" was declared but never referenced [declared_but_not_referenced]
    double d1,d2,d3,d4,d5,d6;  
           ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13766: warning: variable "d2" was declared but never referenced [declared_but_not_referenced]
    double d1,d2,d3,d4,d5,d6;  
              ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13766: warning: variable "d3" was declared but never referenced [declared_but_not_referenced]
    double d1,d2,d3,d4,d5,d6;  
                 ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13766: warning: variable "d4" was declared but never referenced [declared_but_not_referenced]
    double d1,d2,d3,d4,d5,d6;  
                    ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13766: warning: variable "d5" was declared but never referenced [declared_but_not_referenced]
    double d1,d2,d3,d4,d5,d6;  
                       ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 13766: warning: variable "d6" was declared but never referenced [declared_but_not_referenced]
    double d1,d2,d3,d4,d5,d6;  
                          ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 14394: warning: variable "t" was declared but never referenced [declared_but_not_referenced]
    time_t  t;
            ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 14395: warning: variable "ct" was set but never used [set_but_not_used]
    clock_t ct;
            ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 1498: warning: variable "mcstartdate" was set but never used [set_but_not_used]
  static   long mcstartdate            = 0; /* start simulation time */
                ^

"./NECSA_MIXRAD_Nikon_Tomo.c", line 2918: warning: function "strcpy_valid" was declared but never referenced [declared_but_not_referenced]
  static char *strcpy_valid(char *valid, char *original)
               ^

mcgenstate:
     98, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar:
    112, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getvar_void:
    145, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void:
    170, Generating acc routine seq
         Generating NVIDIA GPU code
particle_setvar_void_array:
    193, Generating acc routine seq
         Generating NVIDIA GPU code
particle_restore:
    204, Generating acc routine seq
         Generating NVIDIA GPU code
particle_getuservar_byid:
    213, Generating acc routine seq
         Generating NVIDIA GPU code
particle_uservar_init:
    223, Generating acc routine seq
         Generating NVIDIA GPU code
noprintf:
   1546, Generating acc routine seq
         Generating NVIDIA GPU code
str_comp:
   1550, Generating acc routine seq
         Generating NVIDIA GPU code
str_len:
   1559, Generating acc routine seq
         Generating NVIDIA GPU code
mcget_ncount:
   4182, Generating acc routine seq
         Generating NVIDIA GPU code
coords_set:
   4613, Generating acc routine seq
         Generating NVIDIA GPU code
coords_get:
   4624, Generating acc routine seq
         Generating NVIDIA GPU code
coords_add:
   4633, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sub:
   4645, Generating acc routine seq
         Generating NVIDIA GPU code
coords_neg:
   4657, Generating acc routine seq
         Generating NVIDIA GPU code
coords_scale:
   4667, Generating acc routine seq
         Generating NVIDIA GPU code
coords_sp:
   4677, Generating acc routine seq
         Generating NVIDIA GPU code
coords_xp:
   4685, Generating acc routine seq
         Generating NVIDIA GPU code
coords_len:
   4695, Generating acc routine seq
         Generating NVIDIA GPU code
coords_print:
   4717, Generating acc routine seq
         Generating NVIDIA GPU code
coords_norm:
   4724, Generating acc routine seq
         Generating NVIDIA GPU code
rot_set_rotation:
   4770, Generating acc routine seq
         Generating NVIDIA GPU code
rot_test_identity:
   4805, Generating acc routine seq
         Generating NVIDIA GPU code
rot_mul:
   4816, Generating acc routine seq
         Generating NVIDIA GPU code
rot_copy:
   4833, Generating acc routine seq
         Generating NVIDIA GPU code
rot_transpose:
   4844, Generating acc routine seq
         Generating NVIDIA GPU code
rot_apply:
   4860, Generating acc routine seq
         Generating NVIDIA GPU code
vec_prod_func:
   4889, Generating acc routine seq
         Generating NVIDIA GPU code
scalar_prod:
   4900, Generating acc routine seq
         Generating NVIDIA GPU code
norm_func:
   4904, Generating acc routine seq
         Generating NVIDIA GPU code
sort_absorb_last:
   4939, Generating present(particles[:buffer_len],pbuffer[:buffer_len])
         Generating implicit firstprivate(tidx)
         Generating NVIDIA GPU code
       4946, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */
       4955, #pragma acc loop seq
   4939, Generating implicit copy(lens[:]) [if not already present]
   4946, Generating implicit firstprivate(ll,l)
   4957, Accelerator restriction: induction variable live-out from loop: i
   4958, Accelerator restriction: induction variable live-out from loop: i
   4959, Accelerator restriction: induction variable live-out from loop: i
   4960, Accelerator restriction: induction variable live-out from loop: i
   4962, Accelerator restriction: induction variable live-out from loop: j
   4963, Accelerator restriction: induction variable live-out from loop: j
   4964, Accelerator restriction: induction variable live-out from loop: j
   4965, Accelerator restriction: induction variable live-out from loop: j
   4987, Generating present(pbuffer[:buffer_len])
         Generating implicit firstprivate(tidx)
         Generating NVIDIA GPU code
       4991, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */
       4994, #pragma acc loop seq
   4987, Generating implicit copyin(lens[:]) [if not already present]
         Generating implicit copy(particles[:]) [if not already present]
         Generating implicit copyin(los[:]) [if not already present]
   4994, Generating implicit firstprivate(l)
   5011, Generating present(particles[:buffer_len])
         Generating implicit firstprivate(accumlen,tidx,mult)
         Generating NVIDIA GPU code
       5015, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */
       5022, #pragma acc loop seq
   5011, Local memory used for targetbuffer,sourcebuffer
mccoordschange:
   5081, Generating acc routine seq
         Generating NVIDIA GPU code
mccoordschange_polarisation:
   5112, Generating acc routine seq
         Generating NVIDIA GPU code
normal_vec:
   5129, Generating acc routine seq
         Generating NVIDIA GPU code
solve_2nd_order:
   5228, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_circle:
   5312, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_angular:
   5378, Generating acc routine seq
         Generating NVIDIA GPU code
_randvec_target_rect_real:
   5455, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_srandom:
   5727, Generating acc routine seq
         Generating NVIDIA GPU code
kiss_random:
   5739, Generating acc routine seq
         Generating NVIDIA GPU code
_hash:
   5771, Generating acc routine seq
         Generating NVIDIA GPU code
_randnorm2:
   5812, Generating acc routine seq
         Generating NVIDIA GPU code
_randtriangle:
   5823, Generating acc routine seq
         Generating NVIDIA GPU code
_rand01:
   5828, Generating acc routine seq
         Generating NVIDIA GPU code
_randpm1:
   5836, Generating acc routine seq
         Generating NVIDIA GPU code
_rand0max:
   5844, Generating acc routine seq
         Generating NVIDIA GPU code
_randminmax:
   5851, Generating acc routine seq
         Generating NVIDIA GPU code
mcsetstate:
   6514, Generating acc routine seq
         Generating NVIDIA GPU code
mcgetstate:
   6547, Generating acc routine seq
         Generating NVIDIA GPU code
inside_rectangle:
   6608, Generating acc routine seq
         Generating NVIDIA GPU code
box_intersect:
   6624, Generating acc routine seq
         Generating NVIDIA GPU code
cylinder_intersect:
   6710, Generating acc routine seq
         Generating NVIDIA GPU code
sphere_intersect:
   6778, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Index:
   7934, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value:
   8002, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Value2d:
   8081, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d:
   8549, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp1d_nearest:
   8565, Generating acc routine seq
         Generating NVIDIA GPU code
Table_Interp2d:
   8583, Generating acc routine seq
         Generating NVIDIA GPU code
off_F:
   8870, Generating acc routine seq
         Generating NVIDIA GPU code
off_sign:
   8875, Generating acc routine seq
         Generating NVIDIA GPU code
off_normal:
   8885, Generating acc routine seq
         Generating NVIDIA GPU code
off_pnpoly:
   8911, Generating acc routine seq
         Generating NVIDIA GPU code
off_intersectPoly:
   8974, Generating acc routine seq
         Generating NVIDIA GPU code
off_init_planes:
   9105, Generating acc routine seq
         Generating NVIDIA GPU code
off_clip_3D_mod:
   9150, Generating acc routine seq
         Generating NVIDIA GPU code
off_clip_3D_mod_grav:
   9267, Generating acc routine seq
         Generating NVIDIA GPU code
off_compare:
   9385, Generating acc routine seq
         Generating NVIDIA GPU code
off_cleanDouble:
   9397, Generating acc routine seq
         Generating NVIDIA GPU code
off_cleanInOut:
   9432, Generating acc routine seq
         Generating NVIDIA GPU code
Min_int:
   9683, Generating acc routine seq
         Generating NVIDIA GPU code
merge:
   9690, Generating acc routine seq
         Generating NVIDIA GPU code
gpusort:
   9751, Generating acc routine seq
         Generating NVIDIA GPU code
p_to_quadratic:
   9794, Generating implicit acc routine seq
         Generating implicit acc routine seq
         Generating NVIDIA GPU code
quadraticSolve:
   9809, Generating implicit acc routine seq
         Generating implicit acc routine seq
         Generating NVIDIA GPU code
off_intersect_all:
   9863, Generating acc routine seq
         Generating NVIDIA GPU code
off_intersect:
   9980, Generating acc routine seq
         Generating NVIDIA GPU code
off_x_intersect:
  10002, Generating acc routine seq
         Generating NVIDIA GPU code
class_Source_lab_init:
  11284, Generating update device(xray_mat_data[:6])
init:
  11838, Generating update device(_instrument_var,_Sample_var,_source_energy_monitor_var,_origin_var,_Detector_var,_Sample_holder_var,_Sample_input_var,_anode_var)
class_Progress_bar_trace:
  11879, Generating acc routine seq
         Generating NVIDIA GPU code
class_Source_lab_trace:
  11970, Generating acc routine seq
         Generating NVIDIA GPU code
class_E_monitor_trace:
  12160, Generating acc routine seq
         Generating NVIDIA GPU code
class_PSD_monitor_trace:
  12235, Generating acc routine seq
         Generating NVIDIA GPU code
raytrace_all_funnel:
  13093, Generating present(particles[:livebatchsize])
         Generating implicit firstprivate(livebatchsize)
         Generating NVIDIA GPU code
      13097, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */
  13093, Local memory used for .inl_.inl_mcphoton_0_13768,.inl_particle_13752,.inl_.X2025_13770,.inl_.inl_.X2230_13_13769
  13097, Generating implicit firstprivate(seed,_particle)
  13107, Generating present(particles[:livebatchsize])
         Generating implicit firstprivate(livebatchsize)
         Generating NVIDIA GPU code
      13112, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */
  13107, Local memory used for .inl_.inl_c_1928_13919,.inl_.inl_.inl_b_1902_1934_13924,.inl_.inl_.inl_.X2195_1901_1933_13923,.inl_.inl_b_1924_13918,.inl_.inl_c_1917_13908,.inl_.inl_.inl_b_1902_1923_13913,.inl_.inl_.inl_.X2195_1901_1922_13912,.inl_.inl_b_1913_13907,.inl_.inl_.X2179_1912_13902,.inl_.inl_c_1909_13901,.inl_c_13953,.inl_.inl_b_1908_13899,.inl_.inl_.X2195_1907_13898,.inl_b_13891,.inl_.X2178_13890,.inl_.X2179_13885,.inl_c_13893,.inl_.X2177_13881,.inl_a_13877,.inl_.inl_c_1928_13869,.inl_.inl_.inl_b_1902_1934_13874,.inl_.inl_.inl_.X2195_1901_1933_13873,.inl_.inl_b_1924_13868,.inl_.inl_c_1917_13858,.inl_.inl_.inl_b_1902_1923_13863,.inl_.inl_.inl_.X2195_1901_1922_13862,.inl_.inl_b_1913_13857,.inl_.inl_.X2179_1912_13852,.inl_.inl_c_1909_13851,.inl_c_13882,.inl_.inl_b_1908_13849,.inl_.inl_.X2195_1907_13848,.inl_b_13841,.inl_.X2178_13840,.inl_.X2179_13835,.inl_c_13843,.inl_.X2177_13831,.inl_a_13827,.inl_.inl_c_1928_13817,.inl_.inl_.inl_b_1902_1934_13822,.inl_.inl_.inl_.X2195_1901_1933_13821,.inl_.inl_b_1924_13816,.inl_.inl_c_1917_13806,.inl_.inl_.inl_b_1902_1923_13811,.inl_.inl_.inl_.X2195_1901_1922_13810,.inl_.inl_b_1913_13805,.inl_.inl_.X2179_1912_13800,.inl_.inl_c_1909_13799,.inl_c_13832,.inl_.inl_b_1908_13797,.inl_.inl_.X2195_1907_13796,.inl_b_13789,.inl_.X2178_13788,.inl_.X2179_13783,.inl_c_13791,.inl_.X2177_13779,.inl_a_13775,_particle_save,.inl_c_13964,.inl_.inl_c_1917_13979,.inl_.inl_.inl_b_1902_1923_13984,.inl_.inl_.inl_.X2195_1901_1922_13983,.inl_.inl_b_1913_13978,.inl_.inl_c_1909_13972,.inl_.inl_.inl_.X2195_1901_1933_13994,.inl_.inl_.X2195_1907_13969,.inl_.inl_b_1908_13970,.inl_.X2179_13956,.inl_.inl_b_1924_13989,.inl_c_13780,.inl_.inl_.inl_b_1902_1934_13995,.inl_.inl_.X2179_1912_13973,.inl_a_13948,.inl_.X2177_13952,.inl_.X2178_13961,.inl_b_13962,.inl_.inl_c_1928_13990
  13204, Generating present(particles[:livebatchsize])
         Generating implicit firstprivate(livebatchsize)
         Generating NVIDIA GPU code
      13207, #pragma acc loop gang, vector(128) /* blockIdx.x threadIdx.x */
  13204, Local memory used for _particle_save,.inl_c_14087,.inl_.inl_c_1917_14102,.inl_.inl_.inl_b_1902_1923_14107,.inl_.inl_.inl_.X2195_1901_1922_14106,.inl_.inl_b_1913_14101,.inl_.inl_c_1909_14095,.inl_.inl_.inl_.X2195_1901_1933_14117,.inl_.inl_.X2195_1907_14092,.inl_.inl_b_1908_14093,.inl_.X2179_14079,.inl_.inl_b_1924_14112,.inl_c_14076,.inl_.inl_.inl_b_1902_1934_14118,.inl_.inl_.X2179_1912_14096,.inl_a_14071,.inl_.X2177_14075,.inl_.X2178_14084,.inl_b_14085,.inl_.inl_c_1928_14113
finally:
  13660, Generating update self(_instrument_var,_Sample_var,_source_energy_monitor_var,_origin_var,_Detector_var,_Sample_holder_var,_Sample_input_var,_anode_var)
mcenabletrace:
   5971, Generating update device(mcdotrace)
DEBUG: CMD: nvc finished
INFO: ===