loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "2" INFO: Using existing c-file: ./SOLEIL_PX2a.c INFO: Using existing binary: ./SOLEIL_PX2a.out INFO: === Simulation 'SOLEIL_PX2a' (/home/nexmap/pkwi/xTESTS/2023-12-20/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_PX2a/SOLEIL_PX2a.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset) Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Ir.dat' (Table_Read_Offset) INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Rh.txt' (Table_Read_Offset) INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/adrenaline.lau' (Table_Read_Offset) INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Warning: material file () not found. Absorption set to 0 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Warning: material file () not found. Absorption set to 0 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Trace ETA 1.33333 [min] % 13 Trace ETA 1.33333 [min] % 13 Trace ETA 1.33333 [min] % 13 Trace ETA 1.31667 [min] % 13 Trace ETA 1.31667 [min] % 13 Trace ETA 1.41667 [min] % 12 Trace ETA 1.31667 [min] % 13 Trace ETA 1.31667 [min] % 13 Trace ETA 1.35 [min] % 13 Trace ETA 1.31667 [min] % 13 Trace ETA 1.31667 [min] % 13 Trace ETA 1.33333 [min] % 13 Trace ETA 1.31667 [min] % 13 Trace ETA 1.31667 [min] % 13 Trace ETA 1.36667 [min] % 13 Trace ETA 1.31667 [min] % 13 23 23 23 23 23 23 23 23 23 23 23 23 23 23 23 22 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 32 43 43 43 43 43 43 43 43 43 43 43 43 43 43 43 42 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 52 63 63 63 63 63 63 63 63 63 63 63 63 63 63 63 62 73 73 73 73 73 73 73 73 73 73 73 73 73 73 73 72 83 83 83 83 83 83 83 83 83 83 83 83 83 83 83 82 93 93 93 93 93 93 93 93 93 93 93 93 93 93 93 92 Finally [SOLEIL_PX2a: 2]. Time: 1.23333 [min] Warning: 997 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 32907 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.23333 [min] Warning: 986 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 34125 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.25 [min] Warning: 946 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.25 [min] Warning: 990 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 34494 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 33328 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.26667 [min] Warning: 1024 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 33722 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Save [SOLEIL_PX2a] Detector: vfm_location_I=8.81424e+21 vfm_location_ERR=9.70956e+19 vfm_location_N=4.99996e+07 "vfm_location_1703044890.x_y" Detector: vfm_takeoff_I=1.97403e+21 vfm_takeoff_ERR=4.55792e+19 vfm_takeoff_N=1.10302e+07 "vfm_takeoff_1703044890.x_y" Detector: hfm_location_I=8.80974e+21 hfm_location_ERR=9.70453e+19 hfm_location_N=4.99993e+07 "hfm_location_1703044890.x_y" Detector: hfm_takeoff_I=2.77772e+21 hfm_takeoff_ERR=5.48224e+19 hfm_takeoff_N=1.53037e+07 "hfm_takeoff_1703044890.x_y" Detector: sample_monitor_I=1.43241e+20 sample_monitor_ERR=1.25482e+19 sample_monitor_N=939609 "sample_monitor_1703044890.x_y" Detector: sample_monitor_hfm_I=1.43241e+20 sample_monitor_hfm_ERR=1.25482e+19 sample_monitor_hfm_N=939609 "sample_monitor_hfm_1703044890.x_y" Detector: sample_monitor_vfm_I=1.43241e+20 sample_monitor_vfm_ERR=1.25482e+19 sample_monitor_vfm_N=939609 "sample_monitor_vfm_1703044890.x_y" Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 939 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 953 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 978 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 34172 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 33825 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 922 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 33905 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 33554 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 970 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 894 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Detector: Eiger9M_I=1.07303e+15 Eiger9M_ERR=2.41526e+14 Eiger9M_N=199691 "Eiger9M.dat" Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 971 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 33675 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 977 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 981 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.31667 [min] Warning: 965 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 34264 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 34227 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 33798 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 34284 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 33445 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 2]. Time: 1.46667 [min] Warning: 978 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 34197 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2023-12-20/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_PX2a/SOLEIL_PX2a.instr in dataset 2