loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./SOLEIL_PX2a.c INFO: Using existing binary: ./SOLEIL_PX2a.out INFO: === Simulation 'SOLEIL_PX2a' (/home/nexmap/pkwi/xTESTS/2023-12-20/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_PX2a/SOLEIL_PX2a.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset) Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Ir.dat' (Table_Read_Offset) INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Rh.txt' (Table_Read_Offset) INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mo.lau' (Table_Read_Offset) INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Warning: material file () not found. Absorption set to 0 Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Warning: material file () not found. Absorption set to 0 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Warning: material file () not found. Absorption set to 0 Single_crystal: Mo.lau structure a=3.147 b=3.147 c=3.147 aa=90 bb=90 cc=90 V0=31.1667 Single_crystal: sample: Read 1480 reflections from file 'Mo.lau' Single_crystal: sample: Vc=31.1667 [Angs] sigma_abs= (mu/rho)*4.96 [barn] sigma_inc=0.08 [barn] reflections=Mo.lau Warning: material file () not found. Absorption set to 0 Trace ETA 1.26667 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.25 [min] % 14 Trace ETA 1.25 [min] % 14 Trace ETA 1.25 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.25 [min] % 14 Trace ETA 1.25 [min] % 14 Trace ETA 1.28333 [min] % 14 Trace ETA 1.25 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.25 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.26667 [min] % 14 24 24 24 24 24 24 24 24 24 24 24 24 24 24 24 24 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 44 44 44 44 44 44 44 44 44 44 44 44 44 44 44 44 54 54 54 54 54 54 54 54 54 54 54 54 54 54 54 54 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 74 74 74 74 74 74 74 74 74 74 74 74 74 74 74 74 84 84 84 84 84 84 84 84 84 84 84 84 84 84 84 84 94 94 94 94 94 94 94 94 94 94 94 94 94 94 94 94 Warning: 1020 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.18333 [min] Warning: 35371 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 995 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.18333 [min] Finally [SOLEIL_PX2a: 1]. Time: 1.18333 [min] Warning: 957 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Save [SOLEIL_PX2a] Warning: 35163 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Detector: vfm_location_I=8.79912e+21 vfm_location_ERR=9.67052e+19 vfm_location_N=4.99997e+07 "vfm_location_1703044807.x_y" Warning: 35480 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Detector: vfm_takeoff_I=1.97193e+21 vfm_takeoff_ERR=4.55417e+19 vfm_takeoff_N=1.10339e+07 "vfm_takeoff_1703044807.x_y" Detector: hfm_location_I=8.79473e+21 hfm_location_ERR=9.66571e+19 hfm_location_N=4.99993e+07 "hfm_location_1703044807.x_y" Detector: hfm_takeoff_I=2.68055e+21 hfm_takeoff_ERR=5.3373e+19 hfm_takeoff_N=1.53037e+07 "hfm_takeoff_1703044807.x_y" Detector: sample_monitor_I=1.57562e+20 sample_monitor_ERR=1.28427e+19 sample_monitor_N=940098 "sample_monitor_1703044807.x_y" Detector: sample_monitor_hfm_I=1.57562e+20 sample_monitor_hfm_ERR=1.28427e+19 sample_monitor_hfm_N=940098 "sample_monitor_hfm_1703044807.x_y" Detector: sample_monitor_vfm_I=1.57562e+20 sample_monitor_vfm_ERR=1.28427e+19 sample_monitor_vfm_N=940098 "sample_monitor_vfm_1703044807.x_y" Finally [SOLEIL_PX2a: 1]. Time: 1.18333 [min] Warning: 977 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.18333 [min] Warning: 993 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 35928 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 36218 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 940 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 35462 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 969 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 970 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 36530 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 35366 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 1027 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 951 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 967 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 36532 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 34681 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 35423 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 957 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 35365 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 937 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 35460 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 974 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.2 [min] Warning: 953 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Detector: Eiger9M_I=3.19191e+11 Eiger9M_ERR=5.66153e+10 Eiger9M_N=184350 "Eiger9M.dat" Warning: 35777 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 36185 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). Finally [SOLEIL_PX2a: 1]. Time: 1.35 [min] Warning: 977 events were removed in Component[17] hfm=Mirror_curved() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 35566 events were removed in Component[24] Eiger9M=PSD_monitor() (negative time, miss next components, rounding errors, Nan, Inf). INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2023-12-20/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_PX2a/SOLEIL_PX2a.instr in dataset 1