INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === Simulation 'Test_Absorption' (/home/nexmap/pkwi/xTESTS/2023-12-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/3.x-dev/data/Mn.txt' (Table_Read_Offset) [Test_Absorption] Initialize [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Reusing input file 'Mn.txt' (Table_Read_Offset) INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Reusing input file 'Mn.txt' (Table_Read_Offset) sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Loading geometry file (OFF/PLY): cube.off Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan4: Material Mn mass fractions: | 1e+02 %: Z= 25 Mn 54.9 [g/mol] 7.44 [g/cm3] sample_scan4: Material Mn M=54.94 [g/mol] density=7.44 [g/cm3] rho=0.0815521 [at/Angs-3] WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Trace ETA 0 [s] % 1241 Trace ETA 0 [s] % 1140 Trace ETA 4 [s] % 241 Trace ETA 0 [s] % 1341 Trace ETA 1 [s] % 940 Trace ETA 1 [s] % 841 Trace ETA 7 [s] % 141 Trace ETA 2 [s] % 440 Trace ETA 0 [s] % 1439 Trace ETA 1 [s] % 739 Trace ETA 2 [s] % 541 Trace ETA 26 [s] % 41 Trace ETA 1 [s] % 1040 Trace ETA 1 [s] % 641 Trace ETA 3 [s] % 341 Trace ETA 0 [s] % 1540 542 1440 740 1141 441 941 842 1342 1041 342 1541 242 42 642 1242 142 543 1441 1142 741 442 843 942 1343 1042 343 1542 243 43 643 1243 143 544 1143 443 1442 742 844 1344 943 1043 344 1543 244 44 644 1244 144 545 1144 444 1443 743 845 1345 944 1044 345 245 1544 45 645 1245 145 546 1145 445 1444 744 846 1346 945 1045 346 246 1545 46 646 1246 146 547 1146 446 1445 745 847 1347 946 347 1046 247 1546 47 647 147 1247 548 1147 447 848 1446 1348 746 947 348 1047 248 1547 48 648 1248 148 549 1148 448 849 1349 1447 747 948 349 1048 249 1548 49 649 1249 149 550 1149 449 850 1350 1448 748 350 949 1049 250 50 1549 650 1250 150 551 1150 450 851 1351 1449 749 351 950 1050 251 51 1550 651 1251 151 552 1151 852 451 1352 352 1450 750 951 1051 252 52 1551 652 152 1252 553 1152 853 452 1353 353 1451 751 952 1052 253 53 653 1552 153 1253 554 854 1153 1354 453 354 953 1452 752 1053 254 54 654 1553 154 1254 555 855 1154 1355 454 355 954 1453 753 255 1054 55 655 1554 1255 155 556 856 1356 1155 455 356 955 1454 256 754 1055 56 656 1256 156 1555 557 857 1357 1156 456 357 956 257 1455 1056 755 57 657 558 1257 157 1556 858 1358 1157 457 358 957 258 1057 1456 756 58 658 559 1258 158 1557 859 1359 1158 458 359 958 259 1058 1457 757 59 659 560 159 1259 1558 860 1360 1159 459 360 260 959 1059 1458 60 758 660 561 160 1260 1559 861 1361 1160 460 361 261 960 1060 61 1459 759 661 562 161 1261 1560 862 1362 1161 461 362 262 961 1061 62 662 563 1460 760 162 1262 1561 863 1363 1162 462 363 263 962 1062 63 564 663 1461 761 163 1263 1562 864 1364 1163 463 364 264 963 64 1063 565 664 1462 164 762 1264 1563 865 1365 1164 365 464 265 964 65 566 1064 665 165 1265 1463 763 1564 866 1366 1165 366 465 266 965 567 66 1065 666 166 1266 1464 764 1565 867 1367 367 1166 466 267 966 568 67 667 1066 167 1267 1465 765 1566 868 1368 368 1167 467 268 569 967 68 668 1067 168 1268 1466 766 869 1567 1369 369 1168 468 269 570 968 69 669 1068 169 1269 1467 767 870 1370 1568 370 1169 469 270 571 70 969 670 1069 1270 170 1468 871 768 1371 1569 371 1170 470 271 572 71 970 671 1070 171 1271 872 1469 1372 769 1570 372 1171 471 272 573 72 971 672 1071 172 1272 873 1373 1470 770 1571 373 1172 472 273 574 73 972 673 1072 173 1273 874 1374 1471 771 1572 374 1173 473 274 575 74 674 973 174 1274 1073 875 1375 1472 1573 772 375 1174 474 275 576 75 675 974 1275 175 1074 876 1376 1473 1574 773 376 1175 475 276 577 76 676 975 176 1276 1075 877 1377 1474 1575 377 774 1176 476 277 578 77 677 976 1277 177 1076 878 1378 378 1576 1475 775 1177 477 278 579 78 678 977 1278 178 1077 879 1379 379 1577 1476 776 1178 478 580 279 79 679 978 1279 179 1078 880 1380 380 1578 1477 777 1179 479 581 280 80 680 979 1280 180 881 1079 1381 381 1579 1478 778 1180 582 480 281 81 681 980 1281 181 882 1080 1382 382 1580 1479 779 583 1181 481 282 82 682 1282 981 182 883 1383 1081 383 1581 1480 584 780 1182 283 482 83 683 1283 982 183 884 1384 1082 384 1582 585 1481 1183 284 781 483 84 684 1284 885 184 983 1385 1083 385 1583 586 285 1482 1184 484 782 85 685 1285 886 185 984 1386 1084 386 587 1584 286 1185 1483 485 783 86 686 887 1286 186 985 1387 1085 387 588 1585 287 1186 486 1484 784 87 687 888 1287 187 1388 986 1086 388 589 1586 288 1187 487 1485 785 88 688 889 1288 188 1389 987 1087 389 590 1587 289 1188 488 1486 786 89 689 890 1289 189 1390 988 1088 390 591 290 1588 1189 489 1487 90 787 690 891 1290 1391 190 989 1089 391 592 291 1589 1190 490 91 1488 788 691 892 1291 1392 191 990 1090 392 593 292 1590 1191 491 92 1489 692 789 893 1292 1393 192 991 1091 393 594 293 1591 1192 492 93 693 1490 894 790 1394 1293 193 992 1092 394 595 294 1592 1193 493 94 694 895 1491 791 1395 1294 194 993 395 1093 596 295 1593 1194 494 95 695 896 1492 1396 792 1295 195 994 396 1094 597 296 1594 1195 495 96 696 897 1397 1493 1296 793 196 995 397 1095 598 297 1595 1196 496 97 898 697 1398 1297 1494 197 794 996 398 599 1096 298 1197 1596 497 98 899 698 1399 1298 198 1495 795 997 399 1097 299 1198 1597 498 99 699 1299 199 1496 796 998 1098 1199 *** TRACE end *** 1598 499 1497 797 999 1099 1599 1498 798 1499 799 Save [Test_Absorption] Detector: emon_I=8.21262e-12 emon_ERR=5.8717e-15 emon_N=5.20181e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Detector: psd_I=8.67448e-09 psd_ERR=1.85409e-12 psd_N=4.39458e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 27 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2023-12-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr in dataset 3