loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === Simulation 'Test_Absorption' (/home/nexmap/pkwi/xTESTS/2023-12-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Loading geometry file (OFF/PLY): cube.off sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan4: Material Mn mass fractions: | 1e+02 %: Z= 25 Mn 54.9 [g/mol] 7.44 [g/cm3] sample_scan4: Material Mn M=54.94 [g/mol] density=7.44 [g/cm3] rho=0.0815521 [at/Angs-3] sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Trace ETA 32 [s] % 33 Trace ETA 32 [s] % 33 Trace ETA 33 [s] % 33 Trace ETA 32 [s] % 33 Trace ETA 33 [s] % 32 Trace ETA 32 [s] % 34 Trace ETA 32 [s] % 33 Trace ETA 32 [s] % 33 Trace ETA 32 [s] % 33 Trace ETA 32 [s] % 33 Trace ETA 33 [s] % 32 Trace ETA 33 [s] % 32 Trace ETA 32 [s] % 33 Trace ETA 31 [s] % 34 Trace ETA 32 [s] % 33 Trace ETA 32 [s] % 33 35 34 34 34 34 34 35 34 34 34 34 34 33 33 33 34 36 36 35 35 35 35 35 35 35 35 35 35 35 34 34 34 37 37 36 36 36 36 36 36 36 36 36 36 36 35 35 35 38 38 37 37 37 37 37 37 37 37 37 37 37 36 36 36 39 39 38 38 38 38 38 38 38 38 38 38 38 37 37 37 40 40 39 39 39 39 39 39 39 39 39 39 39 38 38 38 41 41 40 40 40 40 40 40 40 40 40 40 40 39 39 39 42 42 41 41 41 41 41 41 41 41 41 41 41 40 40 40 43 43 42 42 42 42 42 42 42 42 42 42 42 41 41 41 44 44 43 43 43 43 43 43 43 43 43 43 43 42 42 42 45 45 44 44 44 44 44 44 44 44 44 44 44 43 43 43 46 46 45 45 45 45 45 45 45 45 45 45 45 44 44 44 47 47 46 46 46 46 46 46 46 46 46 46 46 45 45 45 48 48 47 47 47 47 47 47 47 47 47 47 47 46 46 46 49 49 48 48 48 48 48 48 48 48 48 48 48 47 47 47 50 50 49 49 49 49 49 49 49 49 49 49 49 48 48 48 51 51 50 50 50 50 50 50 50 50 50 50 50 49 49 49 52 52 51 51 51 51 51 51 51 51 51 51 51 50 50 50 53 53 52 52 52 52 52 52 52 52 52 52 52 51 51 51 54 54 53 53 53 53 53 53 53 53 53 53 53 52 55 52 52 55 54 54 54 54 54 54 54 54 54 54 54 53 56 56 53 53 55 55 55 55 55 55 55 55 55 55 55 54 57 57 54 54 56 56 56 56 56 56 56 56 56 56 56 58 55 58 55 55 57 57 57 57 57 57 57 57 57 57 57 59 59 56 56 56 58 58 58 58 58 58 58 58 58 58 58 60 60 57 57 57 59 59 59 59 59 59 59 59 59 59 59 61 61 58 58 58 60 60 60 60 60 60 60 60 60 60 60 62 62 59 61 59 59 61 61 61 61 61 61 61 61 61 61 63 63 60 62 60 60 62 62 62 62 62 62 62 62 62 62 64 64 61 63 61 61 63 63 63 63 63 63 63 63 63 65 63 65 62 64 62 62 64 64 64 64 64 64 64 64 64 66 64 66 63 65 63 65 63 65 65 65 65 65 65 65 67 65 65 67 64 66 66 64 66 64 66 66 66 66 66 66 68 66 68 66 67 65 67 67 65 65 67 67 67 67 67 67 69 67 69 67 68 66 68 68 66 68 66 68 68 68 68 68 70 68 70 68 69 67 69 69 69 67 67 69 69 69 69 71 69 71 69 69 70 68 70 70 70 68 70 70 68 70 70 72 70 72 70 70 71 69 71 71 71 71 69 71 71 69 71 73 71 73 71 71 72 70 72 72 72 72 72 72 70 72 70 74 72 74 72 72 73 71 73 73 73 73 73 73 71 73 75 71 73 75 73 73 74 74 72 74 74 74 74 74 76 74 72 72 76 74 74 74 75 75 75 73 75 75 75 77 75 75 73 73 77 75 75 75 76 76 76 74 76 78 76 76 76 76 74 78 74 76 76 76 77 77 77 75 77 79 77 77 77 77 79 75 75 77 77 77 78 78 78 78 76 80 78 78 78 78 80 76 78 76 78 78 79 79 79 79 81 77 79 79 79 79 81 77 79 77 79 79 80 80 80 82 80 78 80 80 80 82 80 80 78 78 80 81 80 81 81 83 81 79 81 81 81 83 81 81 79 79 81 82 81 82 82 84 82 82 82 80 84 82 82 82 80 80 82 83 82 83 83 85 83 83 83 85 81 83 83 83 81 81 83 84 83 84 86 84 84 84 86 84 84 82 84 84 82 82 84 85 84 85 87 85 85 87 85 85 85 83 85 85 83 85 83 86 85 88 86 86 86 88 86 86 86 86 84 86 84 86 87 84 86 89 87 87 87 89 87 87 87 87 85 87 85 88 87 85 87 90 88 88 88 90 88 88 88 88 86 88 89 88 86 86 88 91 89 89 89 91 89 89 89 89 87 89 90 89 87 87 89 92 90 90 92 90 90 90 90 90 88 90 91 90 88 88 90 93 91 91 93 91 91 91 91 91 89 91 92 91 89 89 94 91 92 92 94 92 92 92 92 92 90 92 93 92 90 95 90 92 93 93 95 93 93 93 93 93 91 93 94 93 96 91 91 93 94 94 96 94 94 94 94 94 92 94 95 94 97 92 92 94 95 97 95 95 95 95 95 95 93 95 96 95 98 93 95 93 96 98 96 96 96 96 96 96 94 96 97 99 96 94 96 97 94 99 97 97 97 97 97 97 97 95 98 Finally [Test_Absorption: 3]. Time: 30 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 97 98 95 97 95 98 98 98 98 98 98 98 99 96 98 99 98 96 96 99 99 99 99 99 99 Finally [Test_Absorption: 3]. Time: 31 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 99 97 Finally [Test_Absorption: 3]. Time: 31 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 99 Finally [Test_Absorption: 3]. Time: 31 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 31 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 99 97 97 98 98 98 99 Finally [Test_Absorption: 3]. Time: 31 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 31 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 99 99 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Save [Test_Absorption] Detector: emon_I=8.21774e-12 emon_ERR=5.8728e-15 emon_N=5.20462e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Detector: psd_I=8.67468e-09 psd_ERR=1.85411e-12 psd_N=4.39476e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2023-12-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr in dataset 3