loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === Simulation 'Test_Absorption' (/home/nexmap/pkwi/xTESTS/2023-09-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Loading geometry file (OFF/PLY): cube.off Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan4: Material Mn mass fractions: | 1e+02 %: Z= 25 Mn 54.9 [g/mol] 7.44 [g/cm3] sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan4: Material Mn M=54.94 [g/mol] density=7.44 [g/cm3] rho=0.0815521 [at/Angs-3] Trace ETA 30 [s] % 35 Trace ETA 32 [s] % 34 Trace ETA 33 [s] % 33 Trace ETA 31 [s] % 35 Trace ETA 30 [s] % 35 Trace ETA 30 [s] % 35 Trace ETA 30 [s] % 35 Trace ETA 30 [s] % 36 Trace ETA 30 [s] % 36 Trace ETA 30 [s] % 36 Trace ETA 31 [s] % 35 Trace ETA 30 [s] % 36 Trace ETA 31 [s] % 35 Trace ETA 31 [s] % 35 Trace ETA 31 [s] % 35 Trace ETA 33 [s] % 32 36 37 36 36 37 37 36 37 36 36 36 36 36 35 34 33 38 38 37 38 37 37 38 37 37 37 37 37 37 36 35 34 39 39 39 38 38 39 38 38 38 38 38 38 38 37 36 35 40 40 40 39 39 40 39 39 39 39 39 39 39 38 37 36 41 41 41 40 41 40 40 40 40 40 40 40 40 39 38 37 42 42 42 41 41 42 41 41 41 41 41 41 41 40 39 38 43 43 43 42 43 42 42 42 42 42 42 42 42 41 40 39 44 44 44 44 43 43 43 43 43 43 43 43 43 42 41 40 45 45 45 45 44 44 44 44 44 44 44 44 44 43 42 46 46 46 41 46 45 45 45 45 45 45 45 45 45 44 43 47 47 47 47 46 46 46 42 46 46 46 46 46 46 45 48 48 44 48 48 47 47 47 47 43 47 47 47 47 47 46 49 49 49 45 49 48 48 48 48 48 48 44 48 48 48 47 50 50 50 50 49 49 49 46 49 49 49 49 49 49 45 48 51 51 51 51 50 50 50 50 47 50 50 50 50 50 46 52 52 49 52 52 51 51 51 51 48 51 51 51 51 51 47 53 53 50 53 53 52 52 52 52 49 52 52 52 52 52 48 54 54 54 51 54 53 53 53 53 53 53 53 50 53 53 55 55 49 55 55 52 54 54 54 54 54 54 54 54 54 51 56 56 56 50 56 55 55 53 55 55 55 55 55 55 55 52 57 57 57 57 51 56 56 56 54 56 56 56 56 56 56 53 58 58 58 58 57 57 52 57 55 57 57 57 57 57 57 59 59 54 59 59 58 58 58 53 56 58 58 58 58 58 58 60 60 55 60 60 59 59 59 59 57 54 59 59 59 59 59 61 61 61 56 61 60 60 60 60 58 55 60 60 60 60 60 62 62 62 62 57 61 61 61 61 59 61 56 61 61 61 63 61 63 63 63 62 62 58 62 62 60 62 62 62 64 57 64 62 62 64 64 63 63 63 59 63 61 63 63 63 65 65 63 63 58 65 65 64 64 64 60 64 64 62 66 64 64 66 64 64 66 59 66 65 65 65 65 61 67 65 67 65 63 65 65 65 67 67 60 66 66 66 66 62 68 68 66 66 66 64 66 66 68 68 61 67 67 67 67 63 69 69 67 67 67 65 67 67 69 69 68 68 68 62 68 70 70 64 68 68 68 68 70 66 68 70 69 69 69 63 69 71 71 69 65 69 69 71 69 69 67 71 70 70 70 64 70 72 72 70 70 70 72 66 70 70 68 72 71 71 71 71 65 73 73 71 71 73 71 71 67 71 73 69 72 72 72 72 74 74 66 72 72 74 72 72 72 74 68 70 73 73 73 73 75 75 67 73 75 73 73 73 75 73 69 71 74 74 74 74 76 76 76 74 68 74 74 76 74 74 70 75 75 72 75 77 75 77 77 75 75 75 69 77 75 75 76 76 76 73 71 78 76 78 78 76 76 76 78 76 76 70 77 77 77 74 72 79 79 77 79 77 77 79 77 77 77 71 78 78 78 75 73 80 80 78 80 78 78 80 78 78 78 79 79 72 79 76 81 81 74 79 81 79 81 79 79 79 79 80 80 80 73 82 82 77 80 75 82 80 82 80 80 80 80 81 81 81 83 74 83 78 81 76 83 81 83 81 81 81 81 82 82 82 84 84 75 82 79 84 77 84 82 82 82 82 82 83 83 83 85 85 83 80 76 85 78 85 83 83 83 83 83 84 84 84 86 86 84 81 86 77 79 86 84 84 84 84 85 85 84 85 87 87 85 87 82 78 87 85 80 85 85 86 86 85 85 86 88 88 86 88 83 88 79 86 81 86 86 87 87 86 86 87 89 89 87 89 84 89 87 80 87 87 82 88 88 87 87 90 88 90 88 90 85 90 88 88 81 88 89 89 83 91 88 89 88 91 89 91 91 86 89 89 89 90 90 92 82 90 89 89 92 84 90 92 92 87 90 90 91 90 91 93 91 93 90 90 83 85 93 91 93 88 91 91 92 92 94 91 94 92 91 91 84 86 94 92 94 89 92 93 92 95 93 92 95 93 92 92 85 87 95 93 95 93 90 96 94 94 93 96 93 94 93 93 96 88 86 94 96 94 97 95 95 91 94 97 94 95 94 94 97 95 89 87 97 95 98 96 96 98 95 92 96 95 95 95 98 96 90 98 88 99 96 97 97 99 96 97 93 96 96 96 Finally [Test_Absorption: 3]. Time: 29 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 99 Finally [Test_Absorption: 3]. Time: 29 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 97 99 91 89 97 98 98 97 98 97 94 97 97 Finally [Test_Absorption: 3]. Time: 30 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 98 92 90 98 99 99 Finally [Test_Absorption: 3]. Time: 30 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 99 98 98 95 98 98 99 93 Finally [Test_Absorption: 3]. Time: 30 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 91 99 99 99 96 99 99 Finally [Test_Absorption: 3]. Time: 30 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 94 92 Finally [Test_Absorption: 3]. Time: 31 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 31 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 31 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 97 95 93 98 96 94 99 97 95 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 98 96 99 97 Finally [Test_Absorption: 3]. Time: 32 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 98 99 Save [Test_Absorption] Detector: emon_I=8.21774e-12 emon_ERR=5.8728e-15 emon_N=5.20462e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 33 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 Detector: psd_I=8.67468e-09 psd_ERR=1.85411e-12 psd_N=4.39476e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 33 [s] sample_scan4: scattered intensity: fluo=0 Compton=0 Rayleigh=0 INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2023-09-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr in dataset 3