loading system configuration
loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json
INFO: Using directory: "2"
INFO: Using existing c-file: ./SOLEIL_PX2a.c
INFO: Using existing binary: ./SOLEIL_PX2a.out
INFO: ===
Simulation 'SOLEIL_PX2a' (/home/nexmap/pkwi/xTESTS/2023-02-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_PX2a/SOLEIL_PX2a.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1).
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset)
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset)
Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Ir.dat' (Table_Read_Offset)
Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Rh.txt' (Table_Read_Offset)
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/adrenaline.lau' (Table_Read_Offset)
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Warning: material file () not found. Absorption set to 0
Warning: material file () not found. Absorption set to 0
Warning: material file () not found. Absorption set to 0
Warning: material file () not found. Absorption set to 0
Warning: material file () not found. Absorption set to 0
Warning: material file () not found. Absorption set to 0
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Warning: material file () not found. Absorption set to 0
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Warning: material file () not found. Absorption set to 0
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Warning: material file () not found. Absorption set to 0
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Warning: material file () not found. Absorption set to 0
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau

Trace ETA 1.01667 [min] % 17 
Trace ETA 1.03333 [min] % 17 
Trace ETA 1.01667 [min] % 17 
Trace ETA 1.03333 [min] % 17 
Trace ETA 1.03333 [min] % 17 
Trace ETA 1.01667 [min] % 17 
Trace ETA 1.03333 [min] % 17 
Trace ETA 1.01667 [min] % 17 
Trace ETA 1.01667 [min] % 17 
Trace ETA 1.03333 [min] % 17 
Trace ETA 1.03333 [min] % 17 
Trace ETA 1.01667 [min] % 17 
Trace ETA 1.01667 [min] % 17 
Trace ETA 1.01667 [min] % 17 
Trace ETA 1 [min] % 18 
Trace ETA 1.01667 [min] % 17 28 27 27 27 27 27 27 27 27 27 27 27 27 27 27 27 38 37 37 37 37 37 37 37 37 37 37 37 37 37 37 37 48 47 47 47 47 47 47 47 47 47 47 47 47 47 47 47 58 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 67 67 67 67 67 67 67 67 67 67 67 67 67 67 67 78 77 77 77 77 77 77 77 77 77 77 77 77 77 77 77 88 87 87 87 87 87 87 87 87 87 87 87 87 87 87 87 98 
97 
97 
97 
97 
97 
97 
97 
97 
97 
97 
97 
97 
97 
97 
97 

Save [SOLEIL_PX2a]
Detector: sample_monitor_I=7.71005e+10 sample_monitor_ERR=4.81037e+08 sample_monitor_N=4.99997e+07 "sample_monitor_1675222846.x_y"

Finally [SOLEIL_PX2a: 2]. Time: 57 [s] 
Warning: 314723 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 57 [s] 

Finally [SOLEIL_PX2a: 2]. Time: 57 [s] 
Warning: 314635 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Warning: 314557 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 
Warning: 317761 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 
Warning: 315964 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 
Warning: 316078 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 
Warning: 315751 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 
Warning: 315991 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Warning: 313650 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Warning: 313937 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 
Warning: 315789 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 58 [s] 
Detector: Eiger9M_I=51607.3 Eiger9M_ERR=1744.97 Eiger9M_N=1.88409e+06 "Eiger9M.dat"
Warning: 316184 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Warning: 313749 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Warning: 313437 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Warning: 317132 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 1.1 [min] 
Warning: 316393 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2023-02-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_PX2a/SOLEIL_PX2a.instr in dataset 2