loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-34 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-34 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Test_Absorption' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr): running on 10 nodes (master is 'n-62-29-34', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Reusing input file 'Mn.txt' (Table_Read_Offset) INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Reusing input file 'Mn.txt' (Table_Read_Offset) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Loading geometry file (OFF/PLY): cube.off sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [n-62-29-34:21597] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-34:21597] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-34:21597] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 54 [s] % 20 Trace ETA 57 [s] % 19 Trace ETA 54 [s] % 20 Trace ETA 53 [s] % 20 Trace ETA 57 [s] % 19 Trace ETA 53 [s] % 20 Trace ETA 54 [s] % 20 Trace ETA 53 [s] % 20 Trace ETA 53 [s] % 20 Trace ETA 54 [s] % 20 21 21 21 21 21 21 21 20 20 21 22 22 22 22 22 22 22 21 21 22 23 23 23 23 23 23 23 22 22 23 24 24 24 24 24 24 24 24 23 23 25 25 25 25 25 25 25 25 24 24 26 26 26 26 26 26 26 26 25 25 27 27 27 27 27 27 27 27 26 26 28 28 28 28 28 28 28 28 27 27 29 29 29 29 29 29 29 29 28 28 30 30 30 30 30 30 30 30 29 29 31 31 31 31 31 31 31 31 30 30 32 32 32 32 32 32 32 32 33 33 31 31 33 33 33 33 33 33 34 34 32 32 34 34 34 34 34 34 35 35 35 33 35 33 35 35 35 35 36 36 36 36 36 36 34 34 36 36 37 37 37 37 37 37 37 35 35 37 38 38 38 38 38 38 38 36 36 38 39 39 39 39 39 39 39 37 37 39 40 40 40 40 40 40 40 38 38 40 41 41 41 41 41 41 41 39 39 41 42 42 42 42 42 42 42 40 40 42 43 43 43 43 43 43 43 41 41 43 44 44 44 44 44 44 44 42 42 44 45 45 45 45 45 45 45 43 45 43 46 46 46 46 46 46 46 44 46 44 47 47 47 47 47 47 47 47 45 45 48 48 48 48 48 48 48 48 46 46 49 49 49 49 49 49 49 49 50 50 47 47 50 50 50 50 50 50 51 51 48 48 51 51 51 51 51 51 52 52 52 52 49 52 52 49 52 52 53 53 53 53 53 53 50 53 50 53 54 54 54 54 54 54 54 51 51 54 55 55 55 55 55 55 55 52 52 55 56 56 56 56 56 56 56 53 53 57 56 57 57 57 57 57 57 54 54 58 58 57 58 58 58 58 58 55 55 59 59 58 59 59 59 59 59 56 56 60 60 59 60 60 60 60 60 57 57 61 61 60 61 61 61 61 61 58 62 62 58 61 62 62 62 62 62 59 63 63 59 62 63 63 63 63 63 60 64 64 63 60 64 64 64 64 64 61 65 65 64 65 61 65 65 65 65 66 66 62 65 66 66 62 66 66 66 67 67 63 67 66 67 63 67 67 67 68 68 64 68 67 68 68 64 68 68 69 69 65 69 68 69 69 65 69 69 70 70 70 69 66 70 70 70 66 70 71 71 71 71 70 67 71 71 71 67 72 72 72 72 71 72 68 72 72 68 73 73 73 73 72 73 69 73 73 69 74 74 74 74 73 74 74 70 74 70 75 75 75 75 74 75 75 75 71 71 76 76 76 76 75 76 76 76 72 72 77 77 77 77 76 77 77 77 73 78 78 73 78 78 77 78 78 78 74 79 79 74 79 79 78 79 79 79 75 80 80 75 80 80 79 80 80 80 76 81 81 76 81 81 81 80 81 81 82 82 77 82 82 77 82 81 82 82 83 83 78 83 83 78 83 82 83 83 84 84 79 84 84 84 79 83 84 84 85 85 80 85 85 85 84 80 85 85 86 86 81 86 86 86 85 81 86 86 87 87 87 87 82 87 86 87 82 87 88 88 88 88 83 88 87 88 88 83 89 89 89 89 84 89 88 89 89 84 90 90 90 90 90 85 89 90 90 85 91 91 91 91 91 90 86 91 91 86 92 92 92 92 92 91 87 92 92 93 93 87 93 93 93 92 93 88 93 94 94 88 94 94 94 93 94 89 94 95 95 89 95 95 95 94 95 95 90 96 96 90 96 96 96 95 96 96 91 97 97 97 97 91 97 96 97 97 92 98 98 98 98 92 98 97 98 98 93 99 99 99 99 93 99 98 99 99 94 *** TRACE end *** 94 99 95 95 96 96 97 97 98 98 99 99 Save [Test_Absorption] Detector: emon_I=8.20777e-12 emon_ERR=5.86992e-15 emon_N=5.19957e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 55 [s] Detector: psd_I=8.67444e-09 psd_ERR=1.85408e-12 psd_N=4.39423e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr in dataset 3