loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json INFO: Using directory: "2" INFO: Using existing c-file: ./SOLEIL_PX2a.c INFO: Using existing binary: ./SOLEIL_PX2a.out INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-34 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-34 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'SOLEIL_PX2a' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/SOLEIL_PX2a/SOLEIL_PX2a.instr): running on 10 nodes (master is 'n-62-29-34', MPI version 3.1). [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset) Reusing input file 'Si.txt' (Table_Read_Offset) Reusing input file 'FormFactors.txt' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Ir.dat' (Table_Read_Offset) [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize [SOLEIL_PX2a] Initialize INFO (reflectivity-lib) reflectivity parameterization type: 'eth' INFO (reflectivity-lib) reflectivity parameterization type: 'eth' INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib) reflectivity parameterization type: 'eth' INFO (reflectivity-lib) reflectivity parameterization type: 'eth' INFO (reflectivity-lib) reflectivity parameterization type: 'eth' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Rh.txt' (Table_Read_Offset) INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. Reusing input file 'Rh.txt' (Table_Read_Offset) INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib) reflectivity parameterization type: 'eth' INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib) reflectivity parameterization type: 'eth' INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib) reflectivity parameterization type: 'eth' INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib) reflectivity parameterization type: 'eth' INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib) reflectivity parameterization type: 'eth' INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. INFO (reflectivity-lib): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile. Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251 Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau' Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau [n-62-29-34:21005] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-34:21005] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-34:21005] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 2.05 [min] % 8 Trace ETA 2.05 [min] % 8 Trace ETA 2.06667 [min] % 8 Trace ETA 2.05 [min] % 8 Trace ETA 2.05 [min] % 8 Trace ETA 2.06667 [min] % 8 Trace ETA 2.05 [min] % 8 Trace ETA 2.06667 [min] % 8 Trace ETA 2.08333 [min] % 8 Trace ETA 2.05 [min] % 8 10 10 10 10 10 10 10 10 10 10 20 20 20 20 20 20 20 20 20 20 30 30 30 30 30 30 30 30 30 30 40 40 40 40 40 40 40 40 40 40 50 50 50 50 50 50 50 50 50 50 60 60 60 60 60 60 60 60 60 60 70 70 70 70 70 70 70 70 70 70 80 80 80 80 80 80 80 80 80 80 90 90 90 90 90 90 90 90 90 90 *** TRACE end *** Save [SOLEIL_PX2a] Detector: sample_monitor_I=7.67934e+10 sample_monitor_ERR=4.79963e+08 sample_monitor_N=4.99997e+07 "sample_monitor_1669861880.x_y" Finally [SOLEIL_PX2a: 2]. Time: 2.01667 [min] Finally [SOLEIL_PX2a: 2]. Time: 2.01667 [min] Finally [SOLEIL_PX2a: 2]. Time: 2.01667 [min] Finally [SOLEIL_PX2a: 2]. Time: 2.01667 [min] Detector: Eiger9M_I=47389.2 Eiger9M_ERR=1669.38 Eiger9M_N=1.88436e+06 "Eiger9M.dat" Finally [SOLEIL_PX2a: 2]. Time: 2.01667 [min] Finally [SOLEIL_PX2a: 2]. Time: 2.01667 [min] Finally [SOLEIL_PX2a: 2]. Time: 2.01667 [min] Finally [SOLEIL_PX2a: 2]. Time: 2.01667 [min] Finally [SOLEIL_PX2a: 2]. Time: 2.01667 [min] Finally [SOLEIL_PX2a: 2]. Time: 2.28333 [min] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/SOLEIL_PX2a/SOLEIL_PX2a.instr in dataset 2