loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./SOLEIL_ANATOMIX.c INFO: Using existing binary: ./SOLEIL_ANATOMIX.out INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-34 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-34 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'SOLEIL_ANATOMIX' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr): running on 10 nodes (master is 'n-62-29-34', MPI version 3.1). SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize Monitor_nD: e_repartition_before_cc is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset) SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize Reusing input file 'Si.txt' (Table_Read_Offset) Reusing input file 'FormFactors.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): wire.ply SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize Number of vertices: 2584 SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize Number of polygons: 5438 Bounding box dimensions for geometry wire.ply: Length=0.020000 (11.530%) Width= 0.008997 (11.530%) Depth= 0.016806 (11.530%) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Be.txt' (Table_Read_Offset) WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize SOLEIL_ANATOMIX: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done [n-62-29-34:19477] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-34:19477] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-34:19477] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 13.4667 [min] % 1 Trace ETA 13.2833 [min] % 1 Trace ETA 13.2833 [min] % 1 Trace ETA 13.2833 [min] % 1 Trace ETA 13.2833 [min] % 1 Trace ETA 13.2833 [min] % 1 Trace ETA 13.2833 [min] % 1 Trace ETA 13.4667 [min] % 1 Trace ETA 13.2833 [min] % 1 Trace ETA 13.2833 [min] % 1 10 10 10 10 10 10 10 10 10 10 20 20 20 20 20 20 20 20 20 20 30 30 30 30 30 30 30 30 30 30 40 40 40 40 40 40 40 40 40 40 50 50 50 50 50 50 50 50 50 50 60 60 60 60 60 60 60 60 60 60 70 70 70 70 70 70 70 70 70 70 80 80 80 80 80 80 80 80 80 80 90 90 90 90 90 90 90 90 90 90 *** TRACE end *** Save [SOLEIL_ANATOMIX] Detector: e_repartition_before_cc_I=2.6911e+11 e_repartition_before_cc_ERR=4.71343e+07 e_repartition_before_cc_N=4.99992e+07 "e_repartition_before_cc.E_y" Detector: psd_monitor_before_cc_I=2.69114e+11 psd_monitor_before_cc_ERR=4.71346e+07 psd_monitor_before_cc_N=5e+07 "psd_monitor_before_cc.dat" Detector: psd_after_cc_I=1.90557e+08 psd_after_cc_ERR=1.1372e+06 psd_after_cc_N=5e+07 "psd_after_cc2.dat" Detector: e_monitor_before_sample_I=1.90557e+08 e_monitor_before_sample_ERR=1.1372e+06 e_monitor_before_sample_N=5e+07 "e_monitor_before_sample.dat" Detector: psd_repartition_after_cc_I=1.90557e+08 psd_repartition_after_cc_ERR=1.1372e+06 psd_repartition_after_cc_N=5e+07 "psd_repartition_after_cc.dat" Detector: e_monitor_after_sample_I=1.88235e+08 e_monitor_after_sample_ERR=1.12377e+06 e_monitor_after_sample_N=4.9965e+07 "e_monitor_after_sample.dat" Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4 [min] Detector: psd_monitor_after_cc_I=1.88202e+08 psd_monitor_after_cc_ERR=1.12366e+06 psd_monitor_after_cc_N=4.99619e+07 "psd_monitor_after_sample.dat" Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 12.4167 [min] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr in dataset 1