loading system configuration
loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json
INFO: Using directory: "1"
INFO: Regenerating c-file: MAXIV_DanMAX_pxrd2d.c
CFLAGS= -I@MCCODE_LIB@/miniconda3/include -Wl,-rpath,@MCCODE_LIB@/miniconda3/lib -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas  -DFUNNEL  -std=c99
                            
WARNING:
 The parameter format of powdern is initialized 
 using a static {,,,} vector.
  -> Such static vectors support literal numbers ONLY.
  -> Any vector use of variables or defines must happen via a 
     DECLARE/INITIALIZE pointer.


WARNING:
 The parameter mat_format of powdern is initialized 
 using a static {,,,} vector.
  -> Such static vectors support literal numbers ONLY.
  -> Any vector use of variables or defines must happen via a 
     DECLARE/INITIALIZE pointer.


-----------------------------------------------------------

Generating single GPU kernel or single CPU section layout: 
-> SPLIT N at component powdern

-----------------------------------------------------------

Generating GPU/CPU -DFUNNEL layout:
Component dmu is NOACC, CPUONLY=1
-> FUNNEL mode enabled, SPLIT within buffer.
-> CPU section from component dmu
-> GPU kernel from component src_psd
-> SPLIT within buffer at component powdern

-----------------------------------------------------------
INFO: Recompiling: ./MAXIV_DanMAX_pxrd2d.out
./MAXIV_DanMAX_pxrd2d.c: In function ‘reflec_Init’:
./MAXIV_DanMAX_pxrd2d.c:11726:17: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
           int N=(unsigned int)((double **) pars)[0];
                 ^
/appl/binutils/2.29/bin/ld: warning: /zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib/libicudata.so.70: unsupported GNU_PROPERTY_TYPE (5) type: 0xc0010001
/appl/binutils/2.29/bin/ld: warning: /zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib/libicudata.so.70: unsupported GNU_PROPERTY_TYPE (5) type: 0xc0010002
WARNING: Ignoring invalid parameter: "MAXIV_DanMAX_pxrd2d.instr"
INFO: ===
INFO: Using system default number of mpirun -np processes
--------------------------------------------------------------------------
By default, for Open MPI 4.0 and later, infiniband ports on a device
are not used by default.  The intent is to use UCX for these devices.
You can override this policy by setting the btl_openib_allow_ib MCA parameter
to true.

  Local host:              n-62-29-34
  Local adapter:           mlx4_0
  Local port:              1

--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: There was an error initializing an OpenFabrics device.

  Local host:   n-62-29-34
  Local device: mlx4_0
--------------------------------------------------------------------------
Simulation 'MAXIV_DanMAX_pxrd2d' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/MAXIV_DanMAX_pxrd2d/MAXIV_DanMAX_pxrd2d.instr): running on 10 nodes (master is 'n-62-29-34', MPI version 3.1).
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
si mono in, ml mono out
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
si mono in, ml mono out
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
x offset after DCM is: 0.01, x offset after DMM is: 0.01
z ml mono offset is: 0, z si mono offset is: 0.088647
x offset after DCM is: 0.01, x offset after DMM is: 0.01
z ml mono offset is: 0, z si mono offset is: 0.088647
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
[MAXIV_DanMAX_pxrd2d] Initialize
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
[MAXIV_DanMAX_pxrd2d] Initialize
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
si mono in, ml mono out
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
x offset after DCM is: 0.01, x offset after DMM is: 0.01
z ml mono offset is: 0, z si mono offset is: 0.088647
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
[MAXIV_DanMAX_pxrd2d] Initialize
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/C-diamond.txt' (Table_Read_Offset)
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset)
Reusing input file 'Si.txt' (Table_Read_Offset)
Reusing input file 'FormFactors.txt' (Table_Read_Offset)
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
si mono in, ml mono out
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
si mono in, ml mono out
x offset after DCM is: 0.01, x offset after DMM is: 0.01
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
x offset after DCM is: 0.01, x offset after DMM is: 0.01
z ml mono offset is: 0, z si mono offset is: 0.088647
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
z ml mono offset is: 0, z si mono offset is: 0.088647
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
si mono in, ml mono out
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
x offset after DCM is: 0.01, x offset after DMM is: 0.01
z ml mono offset is: 0, z si mono offset is: 0.088647
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/w_b4c_si_3AArghn.dat' (Table_Read_Offset)
[MAXIV_DanMAX_pxrd2d] Initialize
[MAXIV_DanMAX_pxrd2d] Initialize
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
[MAXIV_DanMAX_pxrd2d] Initialize
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
si mono in, ml mono out
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
x offset after DCM is: 0.01, x offset after DMM is: 0.01
z ml mono offset is: 0, z si mono offset is: 0.088647
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
si mono in, ml mono out
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
x offset after DCM is: 0.01, x offset after DMM is: 0.01
z ml mono offset is: 0, z si mono offset is: 0.088647
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
[MAXIV_DanMAX_pxrd2d] Initialize
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
[MAXIV_DanMAX_pxrd2d] Initialize
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
si mono in, ml mono out
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
x offset after DCM is: 0.01, x offset after DMM is: 0.01
z ml mono offset is: 0, z si mono offset is: 0.088647
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
[MAXIV_DanMAX_pxrd2d] Initialize
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg.
DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg.
si mono in, ml mono out
DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m.
x offset after DCM is: 0.01, x offset after DMM is: 0.01
z ml mono offset is: 0, z si mono offset is: 0.088647
INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15
INFO: DanMAX: PXRD 2d area detector prms: 0.135 0 0.000172 0.000172 1475 1679
[MAXIV_DanMAX_pxrd2d] Initialize
Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506)
WARNING: (Table_Rebin): Rebinning table from C-diamond.txt would exceed 1M rows. Skipping.
oh_diamond_filter1: Rebinning material data (C-diamond.txt) for faster tracing...done
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
Reusing input file 'w_b4c_si_3AArghn.dat' (Table_Read_Offset)
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
Reusing input file 'w_b4c_si_3AArghn.dat' (Table_Read_Offset)
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Be.txt' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/LaB6_660b_AVID2.hkl' (Table_Read_Offset)
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
Table from file 'LaB6_660b_AVID2.hkl' (block 1) is 1453 x 6 (x=1:23), constant step. interpolation: linear
  '# TITLE  La1 B6 [Cubic, Centric (-1 at origin)];#        a         b        ...'
PowderN: powdern: Reading 1453 rows from LaB6_660b_AVID2.hkl
PowderN: powdern: Powder file probably of type Crystallographica/Fullprof (lau)
WARNING: but F2 unit is set to barns=1 (barns). Intensity might be 100 times too high.
PowderN: powdern: Read 1453 reflections from file 'LaB6_660b_AVID2.hkl'
PowderN: powdern: WARNING: You have requested statistics for incoherent scattering but not set a material datafile ('lab6.abs') nor defined sigma_inc!
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/lab6.abs' (Table_Read_Offset)
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
INFO (reflectivity-lib)  reflectivity parameterization type: 'eth'
[n-62-29-34:16676] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected
[n-62-29-34:16676] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
[n-62-29-34:16676] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init

Trace ETA 1.41667 [min] % 12 
Trace ETA 1.4 [min] % 13 
Trace ETA 1.4 [min] % 13 
Trace ETA 1.4 [min] % 13 
Trace ETA 1.41667 [min] % 12 
Trace ETA 1.4 [min] % 13 
Trace ETA 1.4 [min] % 13 
Trace ETA 1.38333 [min] % 13 
Trace ETA 1.4 [min] % 13 
Trace ETA 1.4 [min] % 13 20 20 20 20 20 20 20 20 20 20 30 30 30 30 30 30 30 30 30 30 40 40 40 40 40 40 40 40 40 40 50 50 50 50 50 50 50 50 50 50 60 60 60 60 60 60 60 60 60 60 70 70 70 70 70 70 70 70 70 70 80 80 80 80 80 80 80 80 80 80 90 90 90 90 90 90 90 90 90 90 *** TRACE end *** 

Save [MAXIV_DanMAX_pxrd2d]
Detector: src_psd_I=3.13454e+15 src_psd_ERR=1.89401e+12 src_psd_N=4.99816e+07 "src_mon.psd"
Detector: src_div_I=3.13528e+15 src_div_ERR=1.89422e+12 src_div_N=5e+07 "src_mon.div"
Detector: src_e_I=3.13528e+15 src_e_ERR=1.89422e+12 src_e_N=5e+07 "src_mon.e"
Detector: oh_postmono_psd_I=0.0221744 oh_postmono_psd_ERR=1.46062e-05 oh_postmono_psd_N=1.77917e+07 "oh_postmono.psd"
Detector: oh_postmono_div_I=0.0224125 oh_postmono_div_ERR=1.46759e-05 oh_postmono_div_N=1.83593e+07 "oh_postmono.div"
Detector: oh_postmono_e_I=0.0224125 oh_postmono_e_ERR=1.46759e-05 oh_postmono_e_N=1.83593e+07 "oh_postmono.e"
Detector: eh_start_psd_I=0.0177341 eh_start_psd_ERR=1.31669e-05 eh_start_psd_N=1.13332e+07 "eh_start.psd"
Detector: eh_start_div_I=0.0216242 eh_start_div_ERR=1.44422e-05 eh_start_div_N=1.66357e+07 "eh_start.div"
Detector: eh_start_e_I=0.0216242 eh_start_e_ERR=1.44422e-05 eh_start_e_N=1.66357e+07 "eh_start.e"
Detector: imaging_psd_I=0.0165983 imaging_psd_ERR=1.276e-05 imaging_psd_N=1.0235e+07 "imaging.psd"
Detector: imaging_div_I=0.0216242 imaging_div_ERR=1.44422e-05 imaging_div_N=1.66357e+07 "imaging.div"
Detector: imaging_e_I=0.0216242 imaging_e_ERR=1.44422e-05 imaging_e_N=1.66357e+07 "imaging.e"
Detector: pxrd2_psd_I=0.00161225 pxrd2_psd_ERR=4.06802e-06 pxrd2_psd_N=794333 "pxrd2.psd"
Detector: pxrd2_div_I=0.00161225 pxrd2_div_ERR=4.06802e-06 pxrd2_div_N=794333 "pxrd2.div"
Detector: pxrd2_e_I=0.00161225 pxrd2_e_ERR=4.06802e-06 pxrd2_e_N=794333 "pxrd2.e"

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.36667 [min] 

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.36667 [min] 

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.36667 [min] 

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.36667 [min] 

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.36667 [min] 
Detector: Pilatus_2M_I=8.11913e-05 Pilatus_2M_ERR=1.34056e-07 Pilatus_2M_N=4.08011e+06 "Pilatus_2M.dat"

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.36667 [min] 

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.36667 [min] 

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.36667 [min] 

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.36667 [min] 

Finally [MAXIV_DanMAX_pxrd2d: 1]. Time: 1.41667 [min] 
INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/MAXIV_DanMAX_pxrd2d/MAXIV_DanMAX_pxrd2d.instr in dataset 1