loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Airport_scannerII.c INFO: Using existing binary: ./Airport_scannerII.out WARNING: Ignoring invalid parameter: "Airport_scannerII.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-11 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-11 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Airp_scannerII' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr): running on 10 nodes (master is 'n-62-29-34', MPI version 3.1). [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/book.txt' (Table_Read_Offset) [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize Loading geometry file (OFF/PLY): book.ply [Airp_scannerII] Initialize Number of vertices: 2853 Number of polygons: 5722 sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry book.ply will be applied! Bounding box dimensions for geometry book.ply: sample_scan: Volume[1], material='book.txt' geometry='book.ply' Length=0.239599 (100.000%) Width= 0.029804 (100.000%) Depth= 0.164529 (100.000%) sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/h2o2.dat' (Table_Read_Offset) Loading geometry file (OFF/PLY): h2o2.ply Number of vertices: 406 Number of polygons: 808 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry h2o2.ply will be applied! Bounding box dimensions for geometry h2o2.ply: Length=0.126295 (100.000%) Width= 0.046911 (100.000%) sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Depth= 0.090087 (100.000%) sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/H2O.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): water.ply Number of vertices: 818 Number of polygons: 1632 sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry water.ply will be applied! sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Bounding box dimensions for geometry water.ply: Length=0.066238 (100.000%) Width= 0.058313 (100.000%) Depth= 0.217547 (100.000%) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/ethanol.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): whiskey.ply Number of vertices: 616 Number of polygons: 1228 sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry whiskey.ply will be applied! Bounding box dimensions for geometry whiskey.ply: Length=0.082601 (100.000%) Width= 0.076881 (100.000%) Depth= 0.141927 (100.000%) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Cu.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): wire.ply Number of vertices: 2584 Number of polygons: 5438 sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry wire.ply will be applied! Bounding box dimensions for geometry wire.ply: Length=0.173456 (100.000%) Width= 0.078031 (100.000%) Depth= 0.145752 (100.000%) sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): luggage.off Number of vertices: 37707 Number of polygons: 84521 sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry luggage.off will be applied! Bounding box dimensions for geometry luggage.off: Length=0.324186 (100.000%) Width= 0.260044 (100.000%) Depth= 0.540097 (100.000%) sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' [n-62-29-34:06431] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-34:06431] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-34:06431] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 2.54611 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.38083 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 2.1825 [h] % 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 6 7 7 7 7 7 7 7 8 8 8 7 7 7 8 8 8 8 9 9 9 9 8 8 8 9 9 9 10 10 10 10 10 10 10 9 9 9 11 11 11 11 11 11 11 10 10 10 12 12 12 12 12 12 12 11 11 11 13 13 13 13 13 13 13 12 12 12 14 14 14 14 14 14 14 13 13 13 15 15 15 15 15 15 15 16 16 16 14 14 14 16 16 16 16 17 17 17 15 15 15 17 17 17 17 18 18 18 16 18 16 16 18 18 18 19 19 19 19 19 17 17 19 17 19 20 20 20 20 20 20 20 18 18 18 21 21 21 21 21 21 21 19 19 19 22 22 22 22 22 22 22 23 20 23 20 20 23 23 23 23 23 24 24 24 21 21 21 24 24 24 24 25 25 25 22 22 22 25 25 25 25 26 26 26 23 23 23 26 26 26 26 27 27 27 24 27 24 24 27 27 27 28 28 28 28 25 28 25 25 28 28 29 29 29 29 29 29 26 26 26 29 30 30 30 30 30 30 31 30 31 27 27 31 27 31 31 31 32 31 32 32 28 28 28 32 32 32 33 32 33 33 29 29 29 33 33 33 34 33 34 34 30 30 30 34 34 35 34 35 34 35 31 31 31 35 36 35 36 35 36 35 32 36 32 32 37 36 36 37 37 36 37 38 33 33 33 37 38 37 38 37 38 39 39 38 34 39 38 34 34 38 39 40 40 39 40 39 39 35 35 35 40 41 41 40 41 40 40 36 36 36 41 42 42 41 42 41 41 37 37 37 43 42 43 43 42 42 42 38 38 38 44 43 44 44 43 43 43 39 39 39 45 44 45 45 44 44 44 46 40 40 40 45 46 46 45 45 45 47 46 47 41 47 41 41 46 46 46 48 47 48 48 42 47 42 42 47 47 49 48 49 49 48 48 43 43 43 48 50 49 50 50 49 49 44 44 49 44 51 51 50 51 50 50 50 45 45 45 52 52 51 52 51 51 51 46 46 46 53 53 53 52 52 52 52 54 47 47 47 54 54 53 53 53 53 55 55 55 48 48 54 48 54 54 54 56 56 56 55 49 49 49 55 55 55 57 57 57 56 50 50 50 56 56 56 58 58 58 57 57 51 51 51 57 57 59 59 59 58 58 58 52 52 52 58 60 60 60 59 59 59 61 59 53 53 53 61 61 60 60 60 62 60 62 54 54 54 62 61 61 61 63 61 63 63 55 55 55 62 62 62 64 62 64 64 63 56 56 56 63 63 65 63 65 65 64 57 57 57 64 66 64 66 64 66 65 58 58 58 65 67 65 67 65 67 66 66 59 59 68 59 66 68 66 68 67 67 69 60 60 67 60 67 69 69 68 68 68 61 61 70 68 61 70 70 69 69 69 69 62 71 62 62 71 70 71 70 70 70 72 63 63 63 71 72 72 71 71 71 73 64 64 72 64 73 73 72 72 72 74 73 65 65 74 65 74 73 73 73 74 75 75 66 66 66 75 74 74 74 75 76 76 67 67 75 76 67 75 75 76 77 76 77 68 68 77 76 68 76 77 78 77 78 77 78 69 69 77 69 78 79 78 78 79 79 78 70 70 70 79 79 80 79 80 79 80 71 71 71 80 80 81 80 80 81 81 72 72 81 72 81 81 82 81 82 82 82 73 73 73 82 82 83 82 83 83 83 74 74 74 83 83 83 84 84 84 84 75 75 84 75 84 84 85 85 85 85 85 76 76 85 76 85 86 86 86 86 86 86 77 77 77 86 87 87 87 87 87 87 78 78 78 87 88 88 88 88 88 88 79 79 88 79 89 89 89 89 89 89 89 80 80 90 80 90 90 90 90 90 90 91 81 81 91 81 91 91 91 91 91 92 92 82 82 82 92 92 92 92 92 93 93 83 83 93 93 83 93 93 93 94 94 94 94 84 84 94 84 94 94 95 95 95 95 95 85 85 95 85 95 96 96 96 96 96 86 96 86 86 96 97 97 97 97 97 97 87 87 97 87 98 98 98 98 98 98 88 88 98 99 99 88 99 99 99 99 99 89 89 89 90 90 90 91 91 91 92 92 92 93 93 93 94 94 94 95 95 95 96 96 96 97 97 97 98 98 98 99 99 99 *** TRACE end *** Save [Airp_scannerII] Detector: psd0_I=0.00103487 psd0_ERR=1.46354e-07 psd0_N=5e+07 "psd0.dat" Detector: emon_I=0.00103487 emon_ERR=1.46354e-07 emon_N=5e+07 "emon.dat" Detector: psd2_I=0.000643303 psd2_ERR=1.13545e-07 psd2_N=3.82656e+07 "psd2.dat" Finally [Airp_scannerII: 1]. Time: 2.26944 [h] Finally [Airp_scannerII: 1]. Time: 2.26944 [h] Detector: psd_far_I=1.17632e-05 psd_far_ERR=1.44371e-08 psd_far_N=1.53234e+06 "psdfar.dat" Finally [Airp_scannerII: 1]. Time: 2.26917 [h] Finally [Airp_scannerII: 1]. Time: 2.26944 [h] Finally [Airp_scannerII: 1]. Time: 2.26944 [h] Finally [Airp_scannerII: 1]. Time: 2.26944 [h] Finally [Airp_scannerII: 1]. Time: 2.26944 [h] Finally [Airp_scannerII: 1]. Time: 2.26944 [h] Finally [Airp_scannerII: 1]. Time: 2.26944 [h] Finally [Airp_scannerII: 1]. Time: 2.26917 [h] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr in dataset 1