loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Airport_scannerII.c INFO: Using existing binary: ./Airport_scannerII.out WARNING: Ignoring invalid parameter: "Airport_scannerII.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-12 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-12 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Airp_scannerII' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_1e7/Airport_scannerII/Airport_scannerII.instr): running on 10 nodes (master is 'n-62-29-12', MPI version 3.1). [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/book.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): book.ply Number of vertices: 2853 [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize Number of polygons: 5722 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry book.ply will be applied! Bounding box dimensions for geometry book.ply: Length=0.239599 (100.000%) Width= 0.029804 (100.000%) Depth= 0.164529 (100.000%) sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/h2o2.dat' (Table_Read_Offset) Loading geometry file (OFF/PLY): h2o2.ply Number of vertices: 406 Number of polygons: 808 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry h2o2.ply will be applied! Bounding box dimensions for geometry h2o2.ply: Length=0.126295 (100.000%) Width= 0.046911 (100.000%) Depth= 0.090087 (100.000%) sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/H2O.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): water.ply sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Number of vertices: 818 sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Number of polygons: 1632 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry water.ply will be applied! Bounding box dimensions for geometry water.ply: Length=0.066238 (100.000%) Width= 0.058313 (100.000%) Depth= 0.217547 (100.000%) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/ethanol.txt' (Table_Read_Offset) sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Loading geometry file (OFF/PLY): whiskey.ply Number of vertices: 616 Number of polygons: 1228 sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry whiskey.ply will be applied! Bounding box dimensions for geometry whiskey.ply: Length=0.082601 (100.000%) Width= 0.076881 (100.000%) Depth= 0.141927 (100.000%) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Cu.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): wire.ply Number of vertices: 2584 sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Number of polygons: 5438 sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry wire.ply will be applied! Bounding box dimensions for geometry wire.ply: Length=0.173456 (100.000%) Width= 0.078031 (100.000%) Depth= 0.145752 (100.000%) sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): luggage.off sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Number of vertices: 37707 Number of polygons: 84521 sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry luggage.off will be applied! Bounding box dimensions for geometry luggage.off: Length=0.324186 (100.000%) Width= 0.260044 (100.000%) Depth= 0.540097 (100.000%) sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' [n-62-29-12:12467] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-12:12467] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-12:12467] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 26.1833 [min] % 0 Trace ETA 26.1833 [min] % 0 Trace ETA 22.9167 [min] % 0 Trace ETA 22.9167 [min] % 0 Trace ETA 22.9167 [min] % 0 Trace ETA 25 [min] % 0 Trace ETA 25 [min] % 0 Trace ETA 25 [min] % 0 Trace ETA 25 [min] % 0 Trace ETA 25 [min] % 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 6 7 7 7 7 7 7 7 7 7 7 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 9 9 9 9 10 10 10 10 10 10 10 10 10 10 11 11 11 11 11 11 11 11 11 11 12 12 12 12 12 12 12 12 12 13 13 13 12 13 13 13 13 14 14 14 14 14 13 13 14 13 14 15 15 15 15 15 15 14 15 14 14 16 16 16 16 16 16 16 15 15 15 17 17 17 17 17 17 17 16 16 16 18 18 18 18 18 18 18 17 17 17 19 19 19 19 19 19 19 18 18 20 18 20 20 20 20 20 20 19 21 19 21 21 21 19 21 21 21 22 20 22 22 22 20 22 20 22 22 23 23 23 23 21 23 21 23 21 23 24 24 24 24 24 22 24 22 24 22 25 25 25 25 25 25 23 25 23 23 26 26 26 26 26 26 26 24 24 24 27 27 27 27 27 27 27 25 25 28 25 28 28 28 28 28 28 26 29 29 29 26 29 26 29 29 29 30 30 30 27 30 30 27 27 30 30 31 31 31 31 31 28 31 28 28 31 32 32 32 32 32 32 29 32 29 29 33 33 33 33 33 33 33 30 30 30 34 34 34 34 34 34 34 31 31 35 35 31 35 35 35 35 35 36 32 36 36 32 36 32 36 36 36 37 37 37 37 33 37 33 33 37 37 38 38 38 38 38 34 38 34 34 38 39 39 39 39 39 39 35 35 39 35 40 40 40 40 40 40 36 40 36 36 41 41 41 41 41 41 41 37 37 42 42 37 42 42 42 42 42 38 43 43 38 43 43 38 43 43 43 44 44 39 44 44 39 39 44 44 44 45 45 45 45 40 40 45 40 45 45 46 46 46 46 41 46 41 41 46 46 47 47 47 47 42 47 42 47 42 47 48 48 48 48 43 48 43 48 43 48 49 49 49 49 49 44 49 44 44 49 50 50 50 50 50 50 45 45 50 51 45 51 51 51 51 51 46 51 52 46 52 52 46 52 52 52 47 52 53 53 53 47 53 47 53 53 53 54 54 48 54 54 48 54 48 54 55 54 55 55 55 49 55 49 49 55 56 55 56 56 56 50 56 50 56 50 57 57 56 57 57 57 51 57 51 51 58 58 57 58 58 58 52 58 52 59 59 58 52 59 59 59 59 53 60 60 53 59 60 60 53 60 60 54 61 61 60 61 54 61 54 61 61 62 62 55 62 61 62 55 62 55 62 63 63 63 62 56 63 63 56 56 63 64 64 64 63 64 57 64 57 64 57 65 65 65 64 65 65 58 65 58 66 66 58 66 65 66 66 59 66 59 67 67 67 66 59 67 67 67 60 68 68 60 68 67 68 60 68 68 61 69 69 69 61 68 61 69 69 62 69 70 62 70 70 62 69 70 70 63 70 63 71 71 71 63 70 71 71 64 71 64 72 72 64 72 71 72 72 65 65 72 65 73 73 73 72 73 66 73 66 73 66 74 74 74 67 73 74 74 67 67 74 75 75 75 68 74 75 68 75 68 75 76 76 76 69 76 75 69 76 69 76 77 77 70 77 70 77 76 77 70 77 71 78 78 78 71 78 77 71 78 78 72 79 79 79 72 79 72 78 79 73 79 80 80 80 73 73 80 79 80 74 80 81 81 74 81 74 81 80 81 75 81 75 82 82 82 75 82 81 82 76 82 76 83 83 83 76 83 83 82 77 77 83 84 84 77 84 84 78 84 83 78 84 78 85 85 85 79 85 85 84 79 85 79 86 86 86 80 86 86 85 80 86 80 87 87 87 81 87 87 86 81 87 81 88 88 88 82 88 88 87 82 82 88 89 89 89 83 89 89 83 88 83 89 90 90 90 84 90 84 90 89 84 90 91 91 91 85 85 91 91 90 85 91 92 92 92 86 86 92 92 91 86 92 93 93 93 87 87 93 93 92 87 93 94 94 94 88 88 94 94 88 93 94 89 95 95 95 89 95 95 89 94 90 95 96 96 96 90 90 96 96 95 91 96 97 97 91 97 91 97 97 92 96 97 92 98 98 98 92 98 98 93 97 93 98 99 99 99 93 99 99 94 98 94 99 94 95 99 95 95 96 96 96 97 97 97 98 98 98 99 99 99 *** TRACE end *** Save [Airp_scannerII] Detector: psd0_I=0.00103487 psd0_ERR=3.27257e-07 psd0_N=1e+07 "psd0.dat" Detector: emon_I=0.00103487 emon_ERR=3.27257e-07 emon_N=1e+07 "emon.dat" Detector: psd2_I=0.000643258 psd2_ERR=2.53887e-07 psd2_N=7.65245e+06 "psd2.dat" Finally [Airp_scannerII: 1]. Time: 27.3333 [min] Detector: psd_far_I=1.17812e-05 psd_far_ERR=3.231e-08 psd_far_N=306673 "psdfar.dat" Finally [Airp_scannerII: 1]. Time: 27.3333 [min] Finally [Airp_scannerII: 1]. Time: 27.3333 [min] Finally [Airp_scannerII: 1]. Time: 27.3333 [min] Finally [Airp_scannerII: 1]. Time: 27.3333 [min] Finally [Airp_scannerII: 1]. Time: 27.3333 [min] Finally [Airp_scannerII: 1]. Time: 27.3333 [min] Finally [Airp_scannerII: 1]. Time: 27.3333 [min] Finally [Airp_scannerII: 1]. Time: 27.3333 [min] Finally [Airp_scannerII: 1]. Time: 27.3333 [min] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace_CPU_MPICC_KISS_1e7/Airport_scannerII/Airport_scannerII.instr in dataset 1