loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Union_incoherent.c INFO: Using existing binary: ./Union_incoherent.out INFO: === Simulation 'Union_incoherent' (/home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/Union_incoherent/Union_incoherent.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/V.txt' (Table_Read_Offset) Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize [Union_incoherent] Initialize [Union_incoherent] Initialize [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt Union_make_material: Reading data table for material V.txt Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt --------------------------------------------------------------------- global_process_list.num_elements: 1 name of process [0]: vinc component index [0]: 4 --------------------------------------------------------------------- global_material_list.num_elements: 1 name of material [0]: V component index [0]: 5 my_absoprtion [0]: 0.000000 number of processes [0]: 1 --------------------------------------------------------------------- global_geometry_list.num_elements: 1 name of geometry [0]: vsphere component index [0]: 6 Volume.name [0]: vsphere Volume.p_physics.is_vacuum [0]: 0 Volume.p_physics.my_absoprtion [0]: 0.000000 Volume.p_physics.number of processes [0]: 1 Volume.geometry.shape [0]: sphere Volume.geometry.center.x [0]: 0.000000 Volume.geometry.center.y [0]: 0.000000 Volume.geometry.center.z [0]: 2.000000 Volume.geometry.rotation_matrix[0] [0]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [0]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [0]: [0.000000 0.000000 1.000000] Volume.geometry.focus_data_array.elements[0].Aim [0]: [0.000000 0.000000 1.000000] --------------------------------------------------------------------- number_of_volumes = 2 number_of_masks = 0 number_of_masked_volumes = 0 ---- Overview of the lists generated for each volume ---- List overview for surrounding vacuum LIST: Children for Volume 0 = [1] LIST: Direct_children for Volume 0 = [1] LIST: Intersect_check_list for Volume 0 = [1] LIST: Mask_intersect_list for Volume 0 = [] LIST: Destinations_list for Volume 0 = [] LIST: Reduced_destinations_list for Volume 0 = [] LIST: Next_volume_list for Volume 0 = [1] LIST: mask_list for Volume 0 = [] LIST: masked_by_list for Volume 0 = [] LIST: masked_by_mask_index_list for Volume 0 = [] mask_mode for Volume 0 = 0 List overview for vsphere with sphere shape made of V LIST: Children for Volume 1 = [] LIST: Direct_children for Volume 1 = [] LIST: Intersect_check_list for Volume 1 = [] LIST: Mask_intersect_list for Volume 1 = [] LIST: Destinations_list for Volume 1 = [0] LIST: Reduced_destinations_list for Volume 1 = [] LIST: Next_volume_list for Volume 1 = [0] Is_vacuum for Volume 1 = 0 is_mask_volume for Volume 1 = 0 is_masked_volume for Volume 1 = 0 is_exit_volume for Volume 1 = 0 LIST: mask_list for Volume 1 = [] LIST: masked_by_list for Volume 1 = [] LIST: masked_by_mask_index_list for Volume 1 = [] mask_mode for Volume 1 = 0 Union_master component master initialized sucessfully Trace ETA 39 [s] % 27 Trace ETA 38 [s] % 28 Trace ETA 39 [s] % 28 Trace ETA 38 [s] % 28 Trace ETA 39 [s] % 27 Trace ETA 38 [s] % 28 Trace ETA 38 [s] % 28 Trace ETA 38 [s] % 28 Trace ETA 39 [s] % 28 Trace ETA 38 [s] % 28 Trace ETA 39 [s] % 28 Trace ETA 38 [s] % 28 Trace ETA 38 [s] % 28 Trace ETA 38 [s] % 28 Trace ETA 38 [s] % 28 Trace ETA 39 [s] % 28 38 38 38 38 38 38 38 38 38 38 38 38 38 37 37 38 48 48 48 48 48 48 48 48 48 48 48 48 48 47 48 47 58 58 58 58 58 58 58 58 58 58 58 58 57 58 57 58 68 68 68 68 68 68 68 68 68 68 68 68 67 68 68 67 Reached limit on number of interactions, and discarded the x-ray, was in volume 1 78 78 78 78 78 78 78 78 78 78 78 78 78 77 78 77 88 88 88 88 88 88 88 88 88 88 88 88 88 88 87 87 98 98 98 98 98 98 98 98 98 98 98 98 98 97 98 97 Warning: 2.4003e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_incoherent: 1]. Time: 37 [s] Finally [Union_incoherent: 1]. Time: 38 [s] Finally [Union_incoherent: 1]. Time: 38 [s] Warning: 2.39985e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 2.39969e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 2.39978e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_incoherent: 1]. Time: 38 [s] Warning: 2.39947e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 2.40044e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_incoherent: 1]. Time: 38 [s] Finally [Union_incoherent: 1]. Time: 38 [s] Warning: 2.4005e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_incoherent: 1]. Time: 38 [s] Finally [Union_incoherent: 1]. Time: 38 [s] Warning: 2.39983e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 2.39975e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 2.39939e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_incoherent: 1]. Time: 38 [s] Finally [Union_incoherent: 1]. Time: 38 [s] Save [Union_incoherent] Finally [Union_incoherent: 1]. Time: 38 [s] Finally [Union_incoherent: 1]. Time: 38 [s] Detector: fpi_I=4.28911e-09 fpi_ERR=1.30594e-12 fpi_N=4.99968e+07 "fpi.dat" Warning: 2.39842e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 2.39908e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_incoherent: 1]. Time: 38 [s] Finally [Union_incoherent: 1]. Time: 38 [s] Finally [Union_incoherent: 1]. Time: 38 [s] Warning: 2.3996e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 2.39939e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 2.40022e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Detector: emon_sphere_I=4.28636e-09 emon_sphere_ERR=1.30593e-12 emon_sphere_N=1.15861e+07 "emons.E" Finally [Union_incoherent: 1]. Time: 38 [s] Warning: 2.39841e+06 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/Union_incoherent/Union_incoherent.instr in dataset 1