loading system configuration
loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json
INFO: No output directory specified (--dir)
INFO: Using directory: "Test_SAXS_20221201_023529"
INFO: Regenerating c-file: Test_SAXS.c
DEBUG: CMD: mcxtrace -t -o ./Test_SAXS.c /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/Test_SAXS/Test_SAXS.instr
Info:    'SAXSSpheres' is a contributed component.
Info:    'SAXSShells' is a contributed component.
Info:    'SAXSCylinders' is a contributed component.
Info:    'SAXSEllipticCylinders' is a contributed component.
Info:    'SAXSLiposomes' is a contributed component.
Info:    'SAXSNanodiscs' is a contributed component.
Info:    'SAXSNanodiscsWithTags' is a contributed component.
Info:    'SAXSPDB' is a contributed component.
Info:    'SAXSNanodiscsFast' is a contributed component.
Info:    'SAXSNanodiscsWithTagsFast' is a contributed component.
Info:    'SAXSPDBFast' is a contributed component.
Info:    'SAXSQMonitor' is a contributed component.
Warning: Component Origin=Progress_bar(string profile) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
Warning: Component Source=Source_flat(string spectrum_file) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
Warning: Component QMonitor=SAXSQMonitor(string RFilename) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
Warning: Component QMonitor=SAXSQMonitor(string qFilename) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
CFLAGS= -std=c99 -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas
      INFO: Recompiling: ./Test_SAXS.out
DEBUG: CMD: mpicc -o ./Test_SAXS.out ./Test_SAXS.c -lm -DUSE_MPI -lmpi       -std=c99 -g -lm -O2 -DUSE_MPI -lmpi  -std=c99 -I/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -I/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas
/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../contrib/SAXSNanodiscs.comp: In function ‘ND_FormfactorCylinder’:
/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../contrib/SAXSNanodiscs.comp:67:30: warning: implicit declaration of function ‘j1’ [-Wimplicit-function-declaration]
   double const Formfactor1 = j1(q * ProjectedRadius * sin(Alpha)) / (q * ProjectedRadius * sin(Alpha));
                              ^~
/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../contrib/SAXSNanodiscsWithTags.comp: In function ‘NDwTags_XiRodWithoutEndcaps’:
/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../contrib/SAXSNanodiscsWithTags.comp:103:17: warning: implicit declaration of function ‘j0’ [-Wimplicit-function-declaration]
   ReturnValue = j0(q * r * sin(Alpha)) * sin(q * l * cos(Alpha) / 2.f) / (q * l * cos(Alpha) / 2.f);
                 ^~
INFO: ===