loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./SOLEIL_ANATOMIX.c INFO: Using existing binary: ./SOLEIL_ANATOMIX.out INFO: === Simulation 'SOLEIL_ANATOMIX' (/home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing [SOLEIL_ANATOMIX] Initialize /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg] [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing Warning (source): Undulator is an experimental component - testing is ongoing [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize [SOLEIL_ANATOMIX] Initialize Warning (source): Undulator is an experimental component - testing is ongoing [SOLEIL_ANATOMIX] Initialize Monitor_nD: e_repartition_before_cc is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): wire.ply Number of vertices: 2584 Number of polygons: 5438 Bounding box dimensions for geometry wire.ply: Length=0.020000 (11.530%) Width= 0.008997 (11.530%) Depth= 0.016806 (11.530%) Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Be.txt' (Table_Read_Offset) sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping. sample: Rebinning material data (Be.txt) for faster tracing...done sample: Rebinning material data (Be.txt) for faster tracing...done Trace ETA 4.76667 [min] % 3 Trace ETA 4.76667 [min] % 3 Trace ETA 4.73333 [min] % 3 Trace ETA 4.73333 [min] % 3 Trace ETA 4.76667 [min] % 3 Trace ETA 4.76667 [min] % 3 Trace ETA 4.76667 [min] % 3 Trace ETA 4.76667 [min] % 3 Trace ETA 4.73333 [min] % 3 Trace ETA 4.76667 [min] % 3 Trace ETA 4.76667 [min] % 3 Trace ETA 4.85 [min] % 3 Trace ETA 4.76667 [min] % 3 Trace ETA 4.73333 [min] % 3 Trace ETA 4.73333 [min] % 3 Trace ETA 4.73333 [min] % 3 13 13 13 13 13 13 13 13 13 13 13 13 13 13 13 13 23 23 23 23 23 23 23 23 23 23 23 23 23 23 23 23 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 43 43 43 43 43 43 43 43 43 43 43 43 43 43 43 43 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 53 63 63 63 63 63 63 63 63 63 63 63 63 63 63 63 63 73 73 73 73 73 73 73 73 73 73 73 73 73 73 73 73 83 83 83 83 83 83 83 83 83 83 83 83 83 83 83 83 93 93 93 93 93 93 93 93 93 93 93 93 93 93 93 93 Finally [SOLEIL_ANATOMIX: 1]. Time: 4.45 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.45 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.46667 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.48333 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.48333 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.48333 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.51667 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.51667 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.51667 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.51667 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.51667 [min] Save [SOLEIL_ANATOMIX] Detector: e_repartition_before_cc_I=2.6875e+11 e_repartition_before_cc_ERR=4.71028e+07 e_repartition_before_cc_N=4.99385e+07 "e_repartition_before_cc.E_y" Detector: psd_monitor_before_cc_I=2.69088e+11 psd_monitor_before_cc_ERR=4.71332e+07 psd_monitor_before_cc_N=5e+07 "psd_monitor_before_cc.dat" Detector: psd_after_cc_I=1.91687e+08 psd_after_cc_ERR=1.14169e+06 psd_after_cc_N=5e+07 "psd_after_cc2.dat" Detector: e_monitor_before_sample_I=1.91687e+08 e_monitor_before_sample_ERR=1.14169e+06 e_monitor_before_sample_N=5e+07 "e_monitor_before_sample.dat" Detector: psd_repartition_after_cc_I=1.91687e+08 psd_repartition_after_cc_ERR=1.14169e+06 psd_repartition_after_cc_N=5e+07 "psd_repartition_after_cc.dat" Detector: e_monitor_after_sample_I=1.81038e+08 e_monitor_after_sample_ERR=1.08524e+06 e_monitor_after_sample_N=5e+07 "e_monitor_after_sample.dat" Finally [SOLEIL_ANATOMIX: 1]. Time: 4.55 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.55 [min] Detector: psd_monitor_after_cc_I=1.8102e+08 psd_monitor_after_cc_ERR=1.08518e+06 psd_monitor_after_cc_N=4.99967e+07 "psd_monitor_after_sample.dat" Finally [SOLEIL_ANATOMIX: 1]. Time: 4.55 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.55 [min] Finally [SOLEIL_ANATOMIX: 1]. Time: 4.55 [min] INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_5e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr in dataset 1