loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Union_incoherent.c INFO: Using existing binary: ./Union_incoherent.out INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-31 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-31 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Union_incoherent' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/Union_incoherent/Union_incoherent.instr): running on 10 nodes (master is 'n-62-29-31', MPI version 3.1). [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/V.txt' (Table_Read_Offset) --------------------------------------------------------------------- global_process_list.num_elements: 1 name of process [0]: vinc component index [0]: 4 --------------------------------------------------------------------- global_material_list.num_elements: 1 name of material [0]: V component index [0]: 5 my_absoprtion [0]: 0.000000 number of processes [0]: 1 --------------------------------------------------------------------- global_geometry_list.num_elements: 1 name of geometry [0]: vsphere component index [0]: 6 Volume.name [0]: vsphere Volume.p_physics.is_vacuum [0]: 0 Volume.p_physics.my_absoprtion [0]: 0.000000 Volume.p_physics.number of processes [0]: 1 Volume.geometry.shape [0]: sphere Volume.geometry.center.x [0]: 0.000000 Volume.geometry.center.y [0]: 0.000000 Volume.geometry.center.z [0]: 2.000000 Volume.geometry.rotation_matrix[0] [0]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [0]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [0]: [0.000000 0.000000 1.000000] Volume.geometry.focus_data_array.elements[0].Aim [0]: [0.000000 0.000000 1.000000] --------------------------------------------------------------------- number_of_volumes = 2 number_of_masks = 0 number_of_masked_volumes = 0 ---- Overview of the lists generated for each volume ---- List overview for surrounding vacuum LIST: Children for Volume 0 = [1] LIST: Direct_children for Volume 0 = [1] LIST: Intersect_check_list for Volume 0 = [1] LIST: Mask_intersect_list for Volume 0 = [] LIST: Destinations_list for Volume 0 = [] LIST: Reduced_destinations_list for Volume 0 = [] LIST: Next_volume_list for Volume 0 = [1] LIST: mask_list for Volume 0 = [] LIST: masked_by_list for Volume 0 = [] LIST: masked_by_mask_index_list for Volume 0 = [] mask_mode for Volume 0 = 0 List overview for vsphere with sphere shape made of V LIST: Children for Volume 1 = [] LIST: Direct_children for Volume 1 = [] LIST: Intersect_check_list for Volume 1 = [] LIST: Mask_intersect_list for Volume 1 = [] LIST: Destinations_list for Volume 1 = [0] LIST: Reduced_destinations_list for Volume 1 = [] LIST: Next_volume_list for Volume 1 = [0] Is_vacuum for Volume 1 = 0 is_mask_volume for Volume 1 = 0 is_masked_volume for Volume 1 = 0 is_exit_volume for Volume 1 = 0 LIST: mask_list for Volume 1 = [] LIST: masked_by_list for Volume 1 = [] LIST: masked_by_mask_index_list for Volume 1 = [] mask_mode for Volume 1 = 0 Union_master component master initialized sucessfully [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [Union_incoherent] Initialize Union_make_material: Reading data table for material V.txt [n-62-29-31:09708] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-31:09708] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-31:09708] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 15 [s] % 72 Trace ETA 15 [s] % 71 Trace ETA 15 [s] % 71 Trace ETA 16 [s] % 66 Trace ETA 15 [s] % 71 Trace ETA 16 [s] % 66 Trace ETA 15 [s] % 71 Trace ETA 15 [s] % 71 Trace ETA 15 [s] % 70 Trace ETA 15 [s] % 71 81 81 81 81 81 80 82 81 76 76 91 91 91 91 91 92 90 91 86 86 Finally [Union_incoherent: 1]. Time: 15 [s] Warning: 767911 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_incoherent: 1]. Time: 15 [s] Finally [Union_incoherent: 1]. Time: 15 [s] Finally [Union_incoherent: 1]. Time: 15 [s] Warning: 767501 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 767855 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 767934 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_incoherent: 1]. Time: 15 [s] Warning: 767585 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [Union_incoherent: 1]. Time: 15 [s] Finally [Union_incoherent: 1]. Time: 15 [s] Warning: 768010 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 768170 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). 96 96 Save [Union_incoherent] Finally [Union_incoherent: 1]. Time: 16 [s] Warning: 767772 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Detector: fpi_I=4.29114e-09 fpi_ERR=2.92085e-12 fpi_N=9.99938e+06 "fpi.dat" Finally [Union_incoherent: 1]. Time: 16 [s] Warning: 767997 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Detector: emon_sphere_I=4.2884e-09 emon_sphere_ERR=2.92085e-12 emon_sphere_N=2.31806e+06 "emons.E" Finally [Union_incoherent: 1]. Time: 16 [s] Warning: 767222 events were removed in Component[9] emon_sphere=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/Union_incoherent/Union_incoherent.instr in dataset 1