loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Union_geom_demo.c INFO: Using existing binary: ./Union_geom_demo.out INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-31 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-31 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Union_geom_demo' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/Union_geom_demo/Union_geom_demo.instr): running on 10 nodes (master is 'n-62-29-31', MPI version 3.1). [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) Union_make_material: Reading data table for material Pb.txt Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Pb.txt' (Table_Read_Offset) Union_make_material: Reading data table for material W.txt Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/W.txt' (Table_Read_Offset) [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt Union_make_material: Reading data table for material Pb.txt Union_make_material: Reading data table for material Pb.txt Union_make_material: Reading data table for material W.txt Union_make_material: Reading data table for material W.txt [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt Union_make_material: Reading data table for material Pb.txt Union_make_material: Reading data table for material Pb.txt --------------------------------------------------------------------- global_process_list.num_elements: 0 --------------------------------------------------------------------- global_material_list.num_elements: 3 name of material [0]: matbox component index [0]: 4 my_absoprtion [0]: 0.000000 number of processes [0]: 0 name of material [1]: mattop component index [1]: 5 my_absoprtion [1]: 0.000000 number of processes [1]: 0 name of material [2]: matstick component index [2]: 6 my_absoprtion [2]: 0.000000 number of processes [2]: 0 --------------------------------------------------------------------- global_geometry_list.num_elements: 3 name of geometry [0]: box component index [0]: 8 Volume.name [0]: box Volume.p_physics.is_vacuum [0]: 0 Volume.p_physics.my_absoprtion [0]: 0.000000 Volume.p_physics.number of processes [0]: 0 Volume.geometry.shape [0]: box Volume.geometry.center.x [0]: 0.000000 Volume.geometry.center.y [0]: 0.000000 Volume.geometry.center.z [0]: 1.000000 Volume.geometry.rotation_matrix[0] [0]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [0]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [0]: [0.000000 0.000000 1.000000] Volume.geometry.focus_data_array.elements[0].Aim [0]: [0.000000 0.000000 1.000000] name of geometry [1]: top component index [1]: 9 Volume.name [1]: top Volume.p_physics.is_vacuum [1]: 0 Volume.p_physics.my_absoprtion [1]: 0.000000 Volume.p_physics.number of processes [1]: 0 Volume.geometry.shape [1]: sphere Volume.geometry.center.x [1]: 0.000000 Volume.geometry.center.y [1]: 0.000000 Volume.geometry.center.z [1]: 1.000000 Volume.geometry.rotation_matrix[0] [1]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [1]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [1]: [0.000000 0.000000 1.000000] Volume.geometry.focus_data_array.elements[0].Aim [1]: [0.000000 0.000000 1.000000] name of geometry [2]: stick component index [2]: 10 Volume.name [2]: stick Volume.p_physics.is_vacuum [2]: 0 Volume.p_physics.my_absoprtion [2]: 0.000000 Volume.p_physics.number of processes [2]: 0 Volume.geometry.shape [2]: cylinder Volume.geometry.center.x [2]: -0.002500 Volume.geometry.center.y [2]: -0.002500 Volume.geometry.center.z [2]: 1.000000 Volume.geometry.rotation_matrix[0] [2]: [1.000000 0.000000 0.000000] Volume.geometry.rotation_matrix[1] [2]: [0.000000 1.000000 0.000000] Volume.geometry.rotation_matrix[2] [2]: [0.000000 0.000000 1.000000] Volume.geometry.geometry_parameters.cyl_radius [2]: 0.001250 Volume.geometry.geometry_parameters.height [2]: 0.005000 Volume.geometry.focus_data_array.elements[0].Aim [2]: [0.000000 0.000000 1.000000] --------------------------------------------------------------------- number_of_volumes = 4 number_of_masks = 0 number_of_masked_volumes = 0 ---- Overview of the lists generated for each volume ---- List overview for surrounding vacuum LIST: Children for Volume 0 = [1,2,3] LIST: Direct_children for Volume 0 = [1,3] LIST: Intersect_check_list for Volume 0 = [1,3] LIST: Mask_intersect_list for Volume 0 = [] LIST: Destinations_list for Volume 0 = [] LIST: Reduced_destinations_list for Volume 0 = [] LIST: Next_volume_list for Volume 0 = [1,3] LIST: mask_list for Volume 0 = [] LIST: masked_by_list for Volume 0 = [] LIST: masked_by_mask_index_list for Volume 0 = [] mask_mode for Volume 0 = 0 List overview for box with box shape made of matbox LIST: Children for Volume 1 = [2] LIST: Direct_children for Volume 1 = [2] LIST: Intersect_check_list for Volume 1 = [2,3] LIST: Mask_intersect_list for Volume 1 = [] LIST: Destinations_list for Volume 1 = [0] LIST: Reduced_destinations_list for Volume 1 = [] LIST: Next_volume_list for Volume 1 = [0,2,3] Is_vacuum for Volume 1 = 0 is_mask_volume for Volume 1 = 0 is_masked_volume for Volume 1 = 0 is_exit_volume for Volume 1 = 0 LIST: mask_list for Volume 1 = [] LIST: masked_by_list for Volume 1 = [] LIST: masked_by_mask_index_list for Volume 1 = [] mask_mode for Volume 1 = 0 Union_make_material: Reading data table for material W.txt List overview for top with sphere shape made of mattop LIST: Children for Volume 2 = [] LIST: Direct_children for Volume 2 = [] LIST: Intersect_check_list for Volume 2 = [] LIST: Mask_intersect_list for Volume 2 = [] LIST: Destinations_list for Volume 2 = [1] LIST: Reduced_destinations_list for Volume 2 = [1] Union_make_material: Reading data table for material W.txt LIST: Next_volume_list for Volume 2 = [1] Is_vacuum for Volume 2 = 0 is_mask_volume for Volume 2 = 0 is_masked_volume for Volume 2 = 0 is_exit_volume for Volume 2 = 0 LIST: mask_list for Volume 2 = [] LIST: masked_by_list for Volume 2 = [] LIST: masked_by_mask_index_list for Volume 2 = [] mask_mode for Volume 2 = 0 List overview for stick with cylinder shape made of matstick LIST: Children for Volume 3 = [] LIST: Direct_children for Volume 3 = [] LIST: Intersect_check_list for Volume 3 = [] LIST: Mask_intersect_list for Volume 3 = [] LIST: Destinations_list for Volume 3 = [0,1] LIST: Reduced_destinations_list for Volume 3 = [1] LIST: Next_volume_list for Volume 3 = [0,1] Is_vacuum for Volume 3 = 0 is_mask_volume for Volume 3 = 0 is_masked_volume for Volume 3 = 0 is_exit_volume for Volume 3 = 0 LIST: mask_list for Volume 3 = [] LIST: masked_by_list for Volume 3 = [] LIST: masked_by_mask_index_list for Volume 3 = [] mask_mode for Volume 3 = 0 Union_master component umaster initialized sucessfully [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt Union_make_material: Reading data table for material Pb.txt Union_make_material: Reading data table for material Pb.txt Union_make_material: Reading data table for material Pb.txt Union_make_material: Reading data table for material W.txt Union_make_material: Reading data table for material W.txt Union_make_material: Reading data table for material W.txt [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt Union_make_material: Reading data table for material Pb.txt Union_make_material: Reading data table for material W.txt [Union_geom_demo] Initialize Union_make_material: Reading data table for material Al.txt Union_make_material: Reading data table for material Pb.txt Union_make_material: Reading data table for material W.txt Finally [Union_geom_demo: 1]. Time: 2 [s] Finally [Union_geom_demo: 1]. Time: 2 [s] Finally [Union_geom_demo: 1]. Time: 2 [s] Finally [Union_geom_demo: 1]. Time: 2 [s] Finally [Union_geom_demo: 1]. Time: 2 [s] Finally [Union_geom_demo: 1]. Time: 2 [s] Save [Union_geom_demo] Detector: psd0s_I=7.95722e+14 psd0s_ERR=2.51629e+11 psd0s_N=1e+07 "psd0s.dat" Finally [Union_geom_demo: 1]. Time: 2 [s] Finally [Union_geom_demo: 1]. Time: 2 [s] Detector: psd0_I=7.95722e+14 psd0_ERR=2.51629e+11 psd0_N=1e+07 "psd0.dat" Detector: psd1s_I=4.91617e+14 psd1s_ERR=1.66215e+11 psd1s_N=1e+07 "psd1s.dat" Finally [Union_geom_demo: 1]. Time: 2 [s] Detector: psd1_I=4.91617e+14 psd1_ERR=1.66215e+11 psd1_N=1e+07 "psd1.dat" Finally [Union_geom_demo: 1]. Time: 2 [s] [n-62-29-31:09669] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-31:09669] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-31:09669] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/Union_geom_demo/Union_geom_demo.instr in dataset 1