loading system configuration
loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json
INFO: No output directory specified (--dir)
INFO: Using directory: "Test_SAXS_20221201_104923"
INFO: Regenerating c-file: Test_SAXS.c
DEBUG: CMD: mcxtrace -t -o ./Test_SAXS.c /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/Test_SAXS/Test_SAXS.instr
Info:    'SAXSSpheres' is a contributed component.
Info:    'SAXSShells' is a contributed component.
Info:    'SAXSCylinders' is a contributed component.
Info:    'SAXSEllipticCylinders' is a contributed component.
Info:    'SAXSLiposomes' is a contributed component.
Info:    'SAXSNanodiscs' is a contributed component.
Info:    'SAXSNanodiscsWithTags' is a contributed component.
Info:    'SAXSPDB' is a contributed component.
Info:    'SAXSNanodiscsFast' is a contributed component.
Info:    'SAXSNanodiscsWithTagsFast' is a contributed component.
Info:    'SAXSPDBFast' is a contributed component.
Info:    'SAXSQMonitor' is a contributed component.
Warning: Component Origin=Progress_bar(string profile) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
Warning: Component Source=Source_flat(string spectrum_file) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
Warning: Component QMonitor=SAXSQMonitor(string RFilename) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
Warning: Component QMonitor=SAXSQMonitor(string qFilename) definition parameter
         may be changed into a setting parameter to avoid
         warnings at compile time.
CFLAGS= -I@MCCODE_LIB@/miniconda3/include -Wl,-rpath,@MCCODE_LIB@/miniconda3/lib -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas  -I@MCCODE_LIB@/miniconda3/include -Wl,-rpath,@MCCODE_LIB@/miniconda3/lib -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas 
      INFO: Recompiling: ./Test_SAXS.out
DEBUG: CMD: mpicc -o ./Test_SAXS.out ./Test_SAXS.c -lm -DUSE_MPI -lmpi       -std=c99 -g -lm -O2 -DUSE_MPI -lmpi  -I/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -Wl,-rpath,/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -L/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas  -I/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -Wl,-rpath,/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -L/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas
mccode-r.c: In function ‘sighandler’:
mccode-r.c:3830:5: warning: implicit declaration of function ‘kill’; did you mean ‘ceill’? [-Wimplicit-function-declaration]
/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../contrib/SAXSNanodiscs.comp: In function ‘ND_FormfactorCylinder’:
/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../contrib/SAXSNanodiscs.comp:67:30: warning: implicit declaration of function ‘j1’ [-Wimplicit-function-declaration]
   double const Formfactor1 = j1(q * ProjectedRadius * sin(Alpha)) / (q * ProjectedRadius * sin(Alpha));
                              ^~
/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../contrib/SAXSNanodiscsWithTags.comp: In function ‘NDwTags_XiRodWithoutEndcaps’:
/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../contrib/SAXSNanodiscsWithTags.comp:103:17: warning: implicit declaration of function ‘j0’ [-Wimplicit-function-declaration]
   ReturnValue = j0(q * r * sin(Alpha)) * sin(q * l * cos(Alpha) / 2.f) / (q * l * cos(Alpha) / 2.f);
                 ^~
/appl/binutils/2.29/bin/ld: warning: /zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib/libicudata.so.70: unsupported GNU_PROPERTY_TYPE (5) type: 0xc0010001
/appl/binutils/2.29/bin/ld: warning: /zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib/libicudata.so.70: unsupported GNU_PROPERTY_TYPE (5) type: 0xc0010002
INFO: ===