loading system configuration
loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json
INFO: Using directory: "2"
INFO: Using existing c-file: ./SOLEIL_PX2a.c
INFO: Using existing binary: ./SOLEIL_PX2a.out
INFO: ===
INFO: Using system default number of mpirun -np processes
--------------------------------------------------------------------------
By default, for Open MPI 4.0 and later, infiniband ports on a device
are not used by default.  The intent is to use UCX for these devices.
You can override this policy by setting the btl_openib_allow_ib MCA parameter
to true.

  Local host:              n-62-29-31
  Local adapter:           mlx4_0
  Local port:              1

--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: There was an error initializing an OpenFabrics device.

  Local host:   n-62-29-31
  Local device: mlx4_0
--------------------------------------------------------------------------
Simulation 'SOLEIL_PX2a' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_PX2a/SOLEIL_PX2a.instr): running on 10 nodes (master is 'n-62-29-31', MPI version 3.1).
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Ir.dat' (Table_Read_Offset)
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
[SOLEIL_PX2a] Initialize
Warning (undulator): Undulator is an experimental component - testing is ongoing
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Rh.txt' (Table_Read_Offset)
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/adrenaline.lau' (Table_Read_Offset)
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_toroid.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
Single_crystal: adrenaline.lau structure a=7.873 b=6.79 c=8.638 aa=90 bb=98.02 cc=90 V0=457.251
Single_crystal: sample: Read 4194 reflections from file 'adrenaline.lau'
Warning: material file () not found. Absorption set to 0
Single_crystal: sample: Vc=457.251 [Angs] sigma_abs= (mu/rho)*12.512 [barn] sigma_inc=2087.8 [barn] reflections=adrenaline.lau
[n-62-29-31:06304] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected
[n-62-29-31:06304] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
[n-62-29-31:06304] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init

Trace ETA 24 [s] % 45 
Trace ETA 24 [s] % 45 
Trace ETA 24 [s] % 45 
Trace ETA 24 [s] % 45 
Trace ETA 24 [s] % 45 
Trace ETA 23 [s] % 46 
Trace ETA 24 [s] % 45 
Trace ETA 24 [s] % 45 
Trace ETA 23 [s] % 46 
Trace ETA 23 [s] % 46 56 56 55 56 55 55 55 55 55 55 66 66 65 65 66 65 65 65 65 65 76 76 76 75 75 75 75 75 75 75 86 86 85 86 85 85 85 85 85 85 96 
96 
95 
96 
95 
95 
95 
95 
95 
95 

Save [SOLEIL_PX2a]
Detector: sample_monitor_I=7.69965e+10 sample_monitor_ERR=1.07557e+09 sample_monitor_N=9.99994e+06 "sample_monitor_1669889963.x_y"

Finally [SOLEIL_PX2a: 2]. Time: 24 [s] 
Warning: 100757 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 24 [s] 
Warning: 101649 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 24 [s] 
Warning: 100745 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 24 [s] 
Warning: 100033 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 24 [s] 
Warning: 100943 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 24 [s] 
Warning: 101308 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 24 [s] 
Warning: 100004 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 25 [s] 
Warning: 101681 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Detector: Eiger9M_I=57542.4 Eiger9M_ERR=4159.87 Eiger9M_N=377700 "Eiger9M.dat"

Finally [SOLEIL_PX2a: 2]. Time: 25 [s] 
Warning: 101146 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [SOLEIL_PX2a: 2]. Time: 39 [s] 
Warning: 101404 events were removed in Component[22] Eiger9M=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_PX2a/SOLEIL_PX2a.instr in dataset 2