loading system configuration
loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json
INFO: Using directory: "1"
INFO: Using existing c-file: ./SOLEIL_ANATOMIX.c
INFO: Using existing binary: ./SOLEIL_ANATOMIX.out
INFO: ===
INFO: Using system default number of mpirun -np processes
--------------------------------------------------------------------------
By default, for Open MPI 4.0 and later, infiniband ports on a device
are not used by default.  The intent is to use UCX for these devices.
You can override this policy by setting the btl_openib_allow_ib MCA parameter
to true.

  Local host:              n-62-29-31
  Local adapter:           mlx4_0
  Local port:              1

--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: There was an error initializing an OpenFabrics device.

  Local host:   n-62-29-31
  Local device: mlx4_0
--------------------------------------------------------------------------
Simulation 'SOLEIL_ANATOMIX' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr): running on 10 nodes (master is 'n-62-29-31', MPI version 3.1).
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
[SOLEIL_ANATOMIX] Initialize
[SOLEIL_ANATOMIX] Initialize
Warning (source): Undulator is an experimental component - testing is ongoing
Warning (source): Undulator is an experimental component - testing is ongoing
Monitor_nD: e_repartition_before_cc is using automatic limits option 'auto' together with MPI.
WARNING     this may create incorrect distributions (but integrated flux will be right).
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset)
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
[SOLEIL_ANATOMIX] Initialize
Warning (source): Undulator is an experimental component - testing is ongoing
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset)
Loading geometry file (OFF/PLY): wire.ply
  Number of vertices: 2584
  Number of polygons: 5438
  Bounding box dimensions for geometry wire.ply:
    Length=0.020000 (11.530%)
    Width= 0.008997 (11.530%)
    Depth= 0.016806 (11.530%)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Be.txt' (Table_Read_Offset)
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
sample: Rebinning material data (Be.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
sample: Rebinning material data (Be.txt) for faster tracing...done
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
Warning (source): Undulator is an experimental component - testing is ongoing
[SOLEIL_ANATOMIX] Initialize
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
[SOLEIL_ANATOMIX] Initialize
Warning (source): Undulator is an experimental component - testing is ongoing
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
sample: Rebinning material data (Be.txt) for faster tracing...done
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
[SOLEIL_ANATOMIX] Initialize
Warning (source): Undulator is an experimental component - testing is ongoing
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
[SOLEIL_ANATOMIX] Initialize
Warning (source): Undulator is an experimental component - testing is ongoing
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
Warning (source): Undulator is an experimental component - testing is ongoing
[SOLEIL_ANATOMIX] Initialize
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
sample: Rebinning material data (Be.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
sample: Rebinning material data (Be.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
sample: Rebinning material data (Be.txt) for faster tracing...done
sample: Rebinning material data (Be.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
sample: Rebinning material data (Be.txt) for faster tracing...done
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
Warning (source): Undulator is an experimental component - testing is ongoing
[SOLEIL_ANATOMIX] Initialize
/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr: Monochromator energy=17 [keV], angle=6.67856 [deg]
[SOLEIL_ANATOMIX] Initialize
Warning (source): Undulator is an experimental component - testing is ongoing
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
sample: Rebinning material data (Be.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
sample: Rebinning material data (Be.txt) for faster tracing...done
[n-62-29-31:05925] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected
[n-62-29-31:05925] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
[n-62-29-31:05925] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init

Trace ETA 1.88333 [min] % 9 
Trace ETA 1.91667 [min] % 9 
Trace ETA 1.9 [min] % 9 
Trace ETA 1.88333 [min] % 9 
Trace ETA 1.88333 [min] % 9 
Trace ETA 1.9 [min] % 9 
Trace ETA 1.88333 [min] % 9 
Trace ETA 1.9 [min] % 9 
Trace ETA 1.9 [min] % 9 
Trace ETA 1.88333 [min] % 9 19 19 19 19 19 19 19 19 19 19 29 29 29 29 29 29 29 29 29 29 39 39 39 39 39 39 39 39 39 39 49 49 49 49 49 49 49 49 49 49 59 59 59 59 59 59 59 59 59 59 69 69 69 69 69 69 69 69 69 69 79 79 79 79 79 79 79 79 79 79 89 89 89 89 89 89 89 89 89 89 99 
99 
99 
99 
99 
99 
99 
99 
99 

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.76667 [min] 

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.76667 [min] 

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.76667 [min] 

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.76667 [min] 

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.76667 [min] 

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.76667 [min] 

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.76667 [min] 
99 

Save [SOLEIL_ANATOMIX]
Detector: e_repartition_before_cc_I=2.68028e+11 e_repartition_before_cc_ERR=1.05189e+08 e_repartition_before_cc_N=9.95801e+06 "e_repartition_before_cc.E_y"
Detector: psd_monitor_before_cc_I=2.69168e+11 psd_monitor_before_cc_ERR=1.05415e+08 psd_monitor_before_cc_N=1e+07 "psd_monitor_before_cc.dat"

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.78333 [min] 
Detector: psd_after_cc_I=1.8905e+08 psd_after_cc_ERR=2.5306e+06 psd_after_cc_N=1e+07 "psd_after_cc2.dat"
Detector: e_monitor_before_sample_I=1.8905e+08 e_monitor_before_sample_ERR=2.5306e+06 e_monitor_before_sample_N=1e+07 "e_monitor_before_sample.dat"
Detector: psd_repartition_after_cc_I=1.8905e+08 psd_repartition_after_cc_ERR=2.5306e+06 psd_repartition_after_cc_N=1e+07 "psd_repartition_after_cc.dat"
Detector: e_monitor_after_sample_I=1.78911e+08 e_monitor_after_sample_ERR=2.40961e+06 e_monitor_after_sample_N=1e+07 "e_monitor_after_sample.dat"

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.78333 [min] 
Detector: psd_monitor_after_cc_I=1.78911e+08 psd_monitor_after_cc_ERR=2.40961e+06 psd_monitor_after_cc_N=9.99933e+06 "psd_monitor_after_sample.dat"

Finally [SOLEIL_ANATOMIX: 1]. Time: 1.78333 [min] 
INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/SOLEIL_ANATOMIX/SOLEIL_ANATOMIX.instr in dataset 1