loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./PBD_BT.c INFO: Using existing binary: ./PBD_BT.out WARNING: Ignoring invalid parameter: "PBD_BT.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-31 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-31 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'PBD_BT' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/PBD_BT/PBD_BT.instr): running on 10 nodes (master is 'n-62-29-31', MPI version 3.1). mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 [PBD_BT] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Cu.txt' (Table_Read_Offset) Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset) mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 [PBD_BT] Initialize Component mono_silicon_1a: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component silicon_2c: initialized Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 [PBD_BT] Initialize Component mono_silicon_1a: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component silicon_2c: initialized Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 Component mono_silicon_1a: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component silicon_2c: initialized mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 [PBD_BT] Initialize mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 [PBD_BT] Initialize Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 Component mono_silicon_1a: initialized Component mono_silicon_1a: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component silicon_2c: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component silicon_2c: initialized mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 [PBD_BT] Initialize [PBD_BT] Initialize mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 [PBD_BT] Initialize Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 Component mono_silicon_1a: initialized Component mono_silicon_1a: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component silicon_2c: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component mono_silicon_1a: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component silicon_2c: initialized Component silicon_2c: initialized mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 [PBD_BT] Initialize Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 Component mono_silicon_1a: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component silicon_2c: initialized mirror vertex=(-0.004,-0.100), focal length (mm)= 0.041 monochromator angle, alpha = 23.650930, -20.650930 [PBD_BT] Initialize Bk,Ico,Ich,Icht,p_c=5.02681e-05 1.72468e+12 4.0864e+15 0.682746 0.000617789 Component mono_silicon_1a: initialized Component mono_silicon_1b: initialized Component mono_silicon_1c: initialized Component mono_silicon_1d: initialized Component silicon_1a: initialized Component silicon_1b: initialized Component silicon_1c: initialized Component silicon_2a: initialized Component silicon_2b: initialized Component silicon_2c: initialized Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Warning: No xray could reach Component[32] camera Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[32] camera Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Warning: No xray could reach Component[32] camera Save [PBD_BT] Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Warning: No xray could reach Component[32] camera Detector: mirror_psd_I=1.11812e+16 mirror_psd_ERR=5.29041e+12 mirror_psd_N=1e+07 "mirror.psd" Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Warning: No xray could reach Component[32] camera Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Warning: No xray could reach Component[32] camera Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Warning: No xray could reach Component[32] camera Detector: first_crystal_spect_I=0 first_crystal_spect_ERR=0 first_crystal_spect_N=0 "mono_1_spect.dat" Detector: incoming_spectrum_mon_I=0 incoming_spectrum_mon_ERR=0 incoming_spectrum_mon_N=0 "mono_all_spect.dat" Detector: spectrum_mon_I=0 spectrum_mon_ERR=0 spectrum_mon_N=0 "emon.dat" Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Warning: No xray could reach Component[32] camera Detector: camera_I=0 camera_ERR=0 camera_N=0 "psd_1.dat" Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Warning: No xray could reach Component[32] camera Finally [PBD_BT: 1]. Time: 1 [s] Warning: No xray could reach Component[15] incoming_spectrum_mon Warning: No xray could reach Component[16] silicon_1_arm Warning: No xray could reach Component[17] silicon_1_arm_2 Warning: No xray could reach Component[18] crystal_1_front_shadow_1 Warning: No xray could reach Component[19] silicon_1a Warning: No xray could reach Component[20] silicon_1b Warning: No xray could reach Component[21] silicon_1c Warning: No xray could reach Component[22] crystal_1_front_shadow_2 Warning: No xray could reach Component[23] diffracted_arm Warning: No xray could reach Component[24] crystal_2_arm Warning: No xray could reach Component[25] crystal_2_front_shadow_1 Warning: No xray could reach Component[26] silicon_2a Warning: No xray could reach Component[27] silicon_2b Warning: No xray could reach Component[28] silicon_2c Warning: No xray could reach Component[29] crystal_2_front_shadow_2 Warning: No xray could reach Component[30] camera_arm Warning: No xray could reach Component[31] spectrum_mon Warning: No xray could reach Component[32] camera [n-62-29-31:05759] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-31:05759] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-31:05759] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/PBD_BT/PBD_BT.instr in dataset 1