loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "1" INFO: Regenerating c-file: MAXIV_DanMAX_pxrd1d.c Warning: Component Origin=Progress_bar(string profile) definition parameter may be changed into a setting parameter to avoid warnings at compile time. Warning: Component DMM0a=Mirror_toroid(string reflec) definition parameter may be changed into a setting parameter to avoid warnings at compile time. Warning: Component oh_2dcrl=Lens_parab(string material_datafile) definition parameter may be changed into a setting parameter to avoid warnings at compile time. Info: Defining SPLIT from powdern=PowderN() to END in instrument MAXIV_DanMAX_pxrd1d CFLAGS= -I@MCCODE_LIB@/miniconda3/include -Wl,-rpath,@MCCODE_LIB@/miniconda3/lib -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -std=c99 INFO: Recompiling: ./MAXIV_DanMAX_pxrd1d.out mccode-r.c: In function ‘sighandler’: mccode-r.c:3830:5: warning: implicit declaration of function ‘kill’; did you mean ‘ceill’? [-Wimplicit-function-declaration] /appl/binutils/2.29/bin/ld: warning: /zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib/libicudata.so.70: unsupported GNU_PROPERTY_TYPE (5) type: 0xc0010001 /appl/binutils/2.29/bin/ld: warning: /zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib/libicudata.so.70: unsupported GNU_PROPERTY_TYPE (5) type: 0xc0010002 WARNING: Ignoring invalid parameter: "MAXIV_DanMAX_pxrd1d.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-31 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-31 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'MAXIV_DanMAX_pxrd1d' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/MAXIV_DanMAX_pxrd1d/MAXIV_DanMAX_pxrd1d.instr): running on 10 nodes (master is 'n-62-29-31', MPI version 3.1). DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. si mono in, ml mono out DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 z ml mono offset is: 0, z si mono offset is: 0.088647 banana theta limits=[-2.41103 113.318] bins=30720 INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 [MAXIV_DanMAX_pxrd1d] Initialize Warning (dmu): Undulator is an experimental component - testing is ongoing Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) Monitor_nD: src_psd is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: src_div is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: src_e is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/C-diamond.txt' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset) DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. si mono in, ml mono out DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 z ml mono offset is: 0, z si mono offset is: 0.088647 banana theta limits=[-2.41103 113.318] bins=30720 INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 [MAXIV_DanMAX_pxrd1d] Initialize Warning (dmu): Undulator is an experimental component - testing is ongoing Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/w_b4c_si_3AArghn.dat' (Table_Read_Offset) DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. si mono in, ml mono out DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 z ml mono offset is: 0, z si mono offset is: 0.088647 banana theta limits=[-2.41103 113.318] bins=30720 INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 Warning (dmu): Undulator is an experimental component - testing is ongoing [MAXIV_DanMAX_pxrd1d] Initialize Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. si mono in, ml mono out DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 z ml mono offset is: 0, z si mono offset is: 0.088647 banana theta limits=[-2.41103 113.318] bins=30720 INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. si mono in, ml mono out DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 z ml mono offset is: 0, z si mono offset is: 0.088647 banana theta limits=[-2.41103 113.318] bins=30720 INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 Warning (dmu): Undulator is an experimental component - testing is ongoing [MAXIV_DanMAX_pxrd1d] Initialize Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 [MAXIV_DanMAX_pxrd1d] Initialize Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) Warning (dmu): Undulator is an experimental component - testing is ongoing DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. si mono in, ml mono out DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 z ml mono offset is: 0, z si mono offset is: 0.088647 banana theta limits=[-2.41103 113.318] bins=30720 INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. [MAXIV_DanMAX_pxrd1d] Initialize si mono in, ml mono out Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 Warning (dmu): Undulator is an experimental component - testing is ongoing z ml mono offset is: 0, z si mono offset is: 0.088647 DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. banana theta limits=[-2.41103 113.318] bins=30720 DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. si mono in, ml mono out INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 z ml mono offset is: 0, z si mono offset is: 0.088647 banana theta limits=[-2.41103 113.318] bins=30720 INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 [MAXIV_DanMAX_pxrd1d] Initialize Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) [MAXIV_DanMAX_pxrd1d] Initialize Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) Warning (dmu): Undulator is an experimental component - testing is ongoing Warning (dmu): Undulator is an experimental component - testing is ongoing DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. si mono in, ml mono out DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 z ml mono offset is: 0, z si mono offset is: 0.088647 banana theta limits=[-2.41103 113.318] bins=30720 INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 Warning (dmu): Undulator is an experimental component - testing is ongoing [MAXIV_DanMAX_pxrd1d] Initialize Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) DCM is tuned to E=35 keV corresponding to an angle of 3.23858 (3.23818 + 0.000399326) deg. DMM is tuned to E=35 keV corresponding to an angle of 0.412871 deg. si mono in, ml mono out DMM1 saggital curvature radius is 4549.5 m, meridional radius is 203 m. x offset after DCM is: 0.01, x offset after DMM is: 0.01 z ml mono offset is: 0, z si mono offset is: 0.088647 banana theta limits=[-2.41103 113.318] bins=30720 INFO: DanMAX_undulator: fundamental energy: 3.004, harmonic= 5, target energy= 15 INFO: DanMAX: PXRD 1d-strip prms: 0.064 0.008 4.82206 0 [MAXIV_DanMAX_pxrd1d] Initialize Warning (dmu): Undulator is an experimental component - testing is ongoing Undulator (dmu) (K,B)=f(E1st=3.004)= (1.24755 , 0.83506) Type: 'eth' Type: 'eth' Monitor_nD: oh_postmono_psd is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: oh_postmono_div is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: oh_postmono_e is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Be.txt' (Table_Read_Offset) Monitor_nD: eh_start_psd is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: eh_start_div is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Type: 'eth' Type: 'eth' Monitor_nD: eh_start_e is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: imaging_psd is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: imaging_div is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: imaging_e is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: pxrd1_psd is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: pxrd1_div is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Monitor_nD: pxrd1_e is using automatic limits option 'auto' together with MPI. WARNING this may create incorrect distributions (but integrated flux will be right). Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/LaB6_660b_AVID2.hkl' (Table_Read_Offset) Type: 'eth' Type: 'eth' Table from file 'LaB6_660b_AVID2.hkl' (block 1) is 1453 x 6 (x=1:23), constant step. interpolation: linear '# TITLE La1 B6 [Cubic, Centric (-1 at origin)];# a b ...' PowderN: powdern: Reading 1453 rows from LaB6_660b_AVID2.hkl PowderN: powdern: Powder file probably of type Crystallographica/Fullprof (lau) WARNING: but F2 unit is set to barns=1 (barns). Intensity might be 100 times too high. PowderN: powdern: Read 1453 reflections from file 'LaB6_660b_AVID2.hkl' PowderN: powdern: WARNING: You have requested statistics for incoherent scattering but not set a material datafile ('lab6.abs') nor defined sigma_inc! Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/lab6.abs' (Table_Read_Offset) Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' Type: 'eth' [n-62-29-31:05095] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-31:05095] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-31:05095] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 1.3 [min] % 14 Trace ETA 1.3 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.25 [min] % 14 Trace ETA 1.31667 [min] % 13 Trace ETA 1.3 [min] % 14 Trace ETA 1.26667 [min] % 14 Trace ETA 1.28333 [min] % 14 24 24 24 24 24 24 24 24 24 23 34 34 34 34 34 34 34 33 34 34 44 44 44 44 43 44 44 44 44 44 54 54 54 54 54 53 54 54 54 54 64 64 64 64 63 64 64 64 64 64 74 74 74 73 74 74 74 74 74 74 84 84 84 83 84 84 84 84 84 84 94 94 94 94 93 94 94 94 94 94 Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.21667 [min] Warning: 48811 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.23333 [min] Warning: 1 events were removed in Component[31] oh_end_ap=Slit() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 48001 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.23333 [min] Warning: 50204 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.23333 [min] Warning: 1 events were removed in Component[31] oh_end_ap=Slit() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 49592 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.23333 [min] Warning: 49019 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.23333 [min] Warning: 48600 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.23333 [min] Warning: 49536 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Save [MAXIV_DanMAX_pxrd1d] Detector: src_psd_I=3.11303e+15 src_psd_ERR=4.22148e+12 src_psd_N=9.91624e+06 "src_mon.psd" Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.25 [min] Warning: 49602 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Detector: src_div_I=3.11888e+15 src_div_ERR=4.22542e+12 src_div_N=9.93397e+06 "src_mon.div" Detector: src_e_I=3.1377e+15 src_e_ERR=4.23816e+12 src_e_N=9.99883e+06 "src_mon.e" Detector: oh_postmono_psd_I=0.0220681 oh_postmono_psd_ERR=3.25745e-05 oh_postmono_psd_N=3.61024e+06 "oh_postmono.psd" Detector: oh_postmono_div_I=0.0220918 oh_postmono_div_ERR=3.25926e-05 oh_postmono_div_N=3.61357e+06 "oh_postmono.div" Detector: oh_postmono_e_I=0.0224134 oh_postmono_e_ERR=3.28258e-05 oh_postmono_e_N=3.66814e+06 "oh_postmono.e" Detector: eh_start_psd_I=0.0127573 eh_start_psd_ERR=2.22326e-05 eh_start_psd_N=2.06791e+06 "eh_start.psd" Detector: eh_start_div_I=0.0128001 eh_start_div_ERR=2.2272e-05 eh_start_div_N=2.07472e+06 "eh_start.div" Detector: eh_start_e_I=0.0131641 eh_start_e_ERR=2.25846e-05 eh_start_e_N=2.13361e+06 "eh_start.e" Detector: imaging_psd_I=0.0127721 imaging_psd_ERR=2.22451e-05 imaging_psd_N=2.07025e+06 "imaging.psd" Detector: imaging_div_I=0.0128001 imaging_div_ERR=2.2272e-05 imaging_div_N=2.07472e+06 "imaging.div" Detector: imaging_e_I=0.0131641 imaging_e_ERR=2.25846e-05 imaging_e_N=2.13361e+06 "imaging.e" Detector: pxrd1_psd_I=0.000825846 pxrd1_psd_ERR=6.35652e-06 pxrd1_psd_N=86815 "pxrd1.psd" Detector: pxrd1_div_I=0.000927344 pxrd1_div_ERR=6.74241e-06 pxrd1_div_N=96872 "pxrd1.div" Detector: pxrd1_e_I=0.00153989 pxrd1_e_ERR=8.68919e-06 pxrd1_e_N=160474 "pxrd1.e" Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.25 [min] Warning: 2 events were removed in Component[31] oh_end_ap=Slit() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 50455 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). Detector: dm_strip_banana_I=0.000805788 dm_strip_banana_ERR=2.26648e-07 dm_strip_banana_N=1.1595e+08 "dm_strip_banana.th" Finally [MAXIV_DanMAX_pxrd1d: 1]. Time: 1.25 [min] Warning: 1 events were removed in Component[31] oh_end_ap=Slit() (negative time, miss next components, rounding errors, Nan, Inf). Warning: 47033 events were removed in Component[71] dm_strip_banana=Monitor_nD() (negative time, miss next components, rounding errors, Nan, Inf). INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/MAXIV_DanMAX_pxrd1d/MAXIV_DanMAX_pxrd1d.instr in dataset 1