loading system configuration
loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json
INFO: Using directory: "2"
INFO: Using existing c-file: ./MAXII_811.c
INFO: Using existing binary: ./MAXII_811.out
WARNING: Ignoring invalid parameter: "MAXII_811.instr"
INFO: ===
INFO: Using system default number of mpirun -np processes
--------------------------------------------------------------------------
By default, for Open MPI 4.0 and later, infiniband ports on a device
are not used by default.  The intent is to use UCX for these devices.
You can override this policy by setting the btl_openib_allow_ib MCA parameter
to true.

  Local host:              n-62-29-31
  Local adapter:           mlx4_0
  Local port:              1

--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: There was an error initializing an OpenFabrics device.

  Local host:   n-62-29-31
  Local device: mlx4_0
--------------------------------------------------------------------------
Simulation 'MAXII_811' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/MAXII_811/MAXII_811.instr): running on 10 nodes (master is 'n-62-29-31', MPI version 3.1).
[MAXII_811] Initialize
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/characteristics_wiggler811.dc0' (Table_Read_Offset)
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/C.txt' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Rh.txt' (Table_Read_Offset)
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
[MAXII_811] Initialize
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset)
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Be.txt' (Table_Read_Offset)
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
be_window: Rebinning material data (Be.txt) for faster tracing...done
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Ag.txt' (Table_Read_Offset)
[MAXII_811] Initialize
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Fe.txt' (Table_Read_Offset)
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.laz' (Table_Read_Offset)
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
Table from file 'Si.laz' (block 1) is 45 x 18 (x=1:10), constant step. interpolation: linear
  '# TITLE *-Si-[FD3-MS] Toebbens, D.M.;Stuesser, N.;Knorr, K.;Mayer[2001];# C ...'
PowderN: si_sample: Reading 45 rows from Si.laz
PowderN: si_sample: Read 45 reflections from file 'Si.laz'
PowderN: si_sample: WARNING: You have requested statistics for incoherent scattering but not set a material datafile ('Si.txt') nor defined sigma_inc!
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
be_window: Rebinning material data (Be.txt) for faster tracing...done
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
[MAXII_811] Initialize
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
[MAXII_811] Initialize
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
be_window: Rebinning material data (Be.txt) for faster tracing...done
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
[MAXII_811] Initialize
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
[MAXII_811] Initialize
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
[MAXII_811] Initialize
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
be_window: Rebinning material data (Be.txt) for faster tracing...done
be_window: Rebinning material data (Be.txt) for faster tracing...done
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
be_window: Rebinning material data (Be.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
be_window: Rebinning material data (Be.txt) for faster tracing...done
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
be_window: Rebinning material data (Be.txt) for faster tracing...done
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
[MAXII_811] Initialize
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
[MAXII_811] Initialize
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
be_window: Rebinning material data (Be.txt) for faster tracing...done
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
wiggler: Integrated intensity radiated is 4.54764e+15 pht/s
wiggler: E0!=0 -> assuming intensity spectrum is parametrized by energy [keV]
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
INFO (/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../optics/Mirror_curved.comp): Datafile type not explicit in reflectivity file. Inferring type COATING from datafile.
WARNING: (Table_Rebin): Rebinning table from Be.txt would exceed 1M rows. Skipping.
be_window: Rebinning material data (Be.txt) for faster tracing...done
Warning: xafs_sample: Invalid inner volume specification. Ignoring.
INFO: xafs_sample: Setting rho_o=10.48 from Ag.txt
WARNING: (Table_Rebin): Rebinning table from Fe.txt would exceed 1M rows. Skipping.
xafs_ref_sample: Rebinning material data (Fe.txt) for faster tracing...done
[n-62-29-31:04911] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected
[n-62-29-31:04911] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
[n-62-29-31:04911] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init

Finally [MAXII_811: 2]. Time: 6 [s] 
Warning: 84020 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [MAXII_811: 2]. Time: 6 [s] 
Warning: 84226 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [MAXII_811: 2]. Time: 6 [s] 
Warning: 84142 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [MAXII_811: 2]. Time: 6 [s] 
Warning: 83879 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [MAXII_811: 2]. Time: 7 [s] 
Warning: 83599 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Finally [MAXII_811: 2]. Time: 7 [s] 
Warning: 83833 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).

Save [MAXII_811]
Detector: source_psd_I=4.55597e+15 source_psd_ERR=1.48184e+12 source_psd_N=1e+07 "source.psd"
Detector: source_E_I=4.5521e+15 source_E_ERR=1.48176e+12 source_E_N=9.91725e+06 "source.E"
Detector: source_L_I=4.5521e+15 source_L_ERR=1.48176e+12 source_L_N=9.91725e+06 "source.L"

Finally [MAXII_811: 2]. Time: 7 [s] 

Finally [MAXII_811: 2]. Time: 7 [s] 
Warning: 83679 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Warning: 83769 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Detector: m_entry_psd_I=2.98987e+15 m_entry_psd_ERR=1.16682e+12 m_entry_psd_N=7.85874e+06 "me_psd.dat"
Detector: m_entry_E_I=2.98985e+15 m_entry_E_ERR=1.16682e+12 m_entry_E_N=7.79367e+06 "m_entry.E"
Detector: m_entry_L_I=2.98985e+15 m_entry_L_ERR=1.16682e+12 m_entry_L_N=7.79367e+06 "m_entry.L"
Detector: hutch_psd_I=1.54934e+11 hutch_psd_ERR=6.8747e+09 hutch_psd_N=4.46446e+06 "hutch_psd.dat"
Detector: hutch_E_I=2.26609e+11 hutch_E_ERR=8.31241e+09 hutch_E_N=12952 "hutch.E"
Detector: hutch_E2_I=2.22476e+11 hutch_E2_ERR=8.23857e+09 hutch_E2_N=6.41374e+06 "hutch2.E2"
Detector: hucth_L_I=2.26609e+11 hucth_L_ERR=8.3124e+09 hucth_L_N=13556 "hutch.L"
Detector: I0_I=0 I0_ERR=0 I0_N=0 "I0"
Detector: I1_I=0 I1_ERR=0 I1_N=0 "I1"
Detector: I2_I=0 I2_ERR=0 I2_N=0 "I2"
Detector: diff_sample_psd_I=1.5346e+11 diff_sample_psd_ERR=6.83903e+09 diff_sample_psd_N=4.45218e+06 "diff_sample_psd.dat"
Detector: sphere_psd_I=2.34233e+08 sphere_psd_ERR=3.39003e+07 sphere_psd_N=1.46453e+06 "sphere_psd.dat"
Detector: square_psd_I=9.91108e+06 square_psd_ERR=4.47274e+06 square_psd_N=137913 "square_psd.dat"

Finally [MAXII_811: 2]. Time: 7 [s] 
Warning: 84062 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
Detector: pilatus100k_I=0 pilatus100k_ERR=0 pilatus100k_N=16 "pil_diff.psd"

Finally [MAXII_811: 2]. Time: 8 [s] 
PowderN: si_sample: Info: you may highly improve the computation efficiency by using
    SPLIT 15 COMPONENT si_sample=PowderN(...)
  in the instrument description /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/MAXII_811/MAXII_811.instr.
Warning: 84189 events were removed in Component[47] square_psd=PSD_monitor()
         (negative time, miss next components, rounding errors, Nan, Inf).
INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/MAXII_811/MAXII_811.instr in dataset 2