loading system configuration
loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json
INFO: Using directory: "2"
INFO: Using existing c-file: ./ESRF_ID01.c
INFO: Using existing binary: ./ESRF_ID01.out
WARNING: Ignoring invalid parameter: "ESRF_ID01.instr"
INFO: ===
INFO: Using system default number of mpirun -np processes
--------------------------------------------------------------------------
By default, for Open MPI 4.0 and later, infiniband ports on a device
are not used by default.  The intent is to use UCX for these devices.
You can override this policy by setting the btl_openib_allow_ib MCA parameter
to true.

  Local host:              n-62-29-31
  Local adapter:           mlx4_0
  Local port:              1

--------------------------------------------------------------------------
--------------------------------------------------------------------------
WARNING: There was an error initializing an OpenFabrics device.

  Local host:   n-62-29-31
  Local device: mlx4_0
--------------------------------------------------------------------------
Simulation 'ESRF_ID01' (/zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/ESRF_ID01/ESRF_ID01.instr): running on 10 nodes (master is 'n-62-29-31', MPI version 3.1).
Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Si.txt' (Table_Read_Offset)
Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/FormFactors.txt' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/polycrystal_1layer_2orts.map' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/stretch_2orts.orts' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/GeReduced.lau' (Table_Read_Offset)
mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
Sample: Volume of unit cell is 181.12 AA^3.

Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/GeReduced.lau' (Table_Read_Offset)
Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/GeReduced.lau' (Table_Read_Offset)
Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
Sample: Volume of unit cell is 181.12 AA^3.

WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
Sample: Volume of unit cell is 181.12 AA^3.

Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
Sample: Volume of unit cell is 181.12 AA^3.

WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
Sample: Volume of unit cell is 181.12 AA^3.

mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
Sample: Volume of unit cell is 181.12 AA^3.

WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
Sample: Volume of unit cell is 181.12 AA^3.

mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
Sample: Volume of unit cell is 181.12 AA^3.

Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
Sample: Volume of unit cell is 181.12 AA^3.

Target wavelength is 1.5498 AA. 
The monochromators will be rotated by 14.3078 degrees. 
[ESRF_ID01] Initialize
WARNING: (Table_Rebin): Rebinning table from Si.txt would exceed 1M rows. Skipping.

Sample: 6 reflections found in GeReduced.lau.
Sample: 2 different orientations found in stretch_2orts.orts.
Sample: 441 voxels organised in a 21 by 21 by 1-grid found in polycrystal_1layer_2orts.map.
mccompcurname: Rebinning MaterialDatafile data (Si.txt) for faster tracing.
Sample: The voxels of the polycrystals have dimensions of 9.52381e-06 m by 9.52381e-06 m by 5e-05 m.
Sample: Volume of unit cell is 181.12 AA^3.


Finally [ESRF_ID01: 2]. Time: 3 [s] 

Finally [ESRF_ID01: 2]. Time: 3 [s] 

Finally [ESRF_ID01: 2]. Time: 3 [s] 

Finally [ESRF_ID01: 2]. Time: 3 [s] 

Finally [ESRF_ID01: 2]. Time: 3 [s] 

Finally [ESRF_ID01: 2]. Time: 3 [s] 

Finally [ESRF_ID01: 2]. Time: 3 [s] 

Save [ESRF_ID01]
Detector: DivergenceMonitor_I=3.39479e-05 DivergenceMonitor_ERR=2.01138e-07 DivergenceMonitor_N=512095 "DivMonitor.dat"
Detector: EnergyMonitor_I=3.39479e-05 EnergyMonitor_ERR=2.01138e-07 EnergyMonitor_N=512095 "EnergyMonitor.dat"
Detector: PSDMonitor_I=3.39479e-05 PSDMonitor_ERR=2.01138e-07 PSDMonitor_N=512095 "PSDMonitor.dat"

Finally [ESRF_ID01: 2]. Time: 3 [s] 

Finally [ESRF_ID01: 2]. Time: 3 [s] 
Detector: MAXIPix_I=1.70366e-06 MAXIPix_ERR=2.55611e-08 MAXIPix_N=275736 "DetectorMaxiPix.mcp"

Finally [ESRF_ID01: 2]. Time: 4 [s] 
[n-62-29-31:04627] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected
[n-62-29-31:04627] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
[n-62-29-31:04627] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init
INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-12-01/McXtrace-1.x_CPU_MPICC_1e7/ESRF_ID01/ESRF_ID01.instr in dataset 2