loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_GPU_PGCC_TESLA_KISS/mccode_config.json INFO: No output directory specified (--dir) INFO: Using directory: "TestSAXS_20221101_001901" INFO: Regenerating c-file: TestSAXS.c DEBUG: CMD: mcxtrace -t -o ./TestSAXS.c /zhome/89/0/38697/xTESTS/2022-11-01/McXtrace_GPU_PGCC_TESLA_KISS_5e7/TestSAXS/TestSAXS.instr Info: 'SAXSSpheres' is a contributed component. Info: 'SAXSShells' is a contributed component. Info: 'SAXSCylinders' is a contributed component. Info: 'SAXSEllipticCylinders' is a contributed component. Info: 'SAXSLiposomes' is a contributed component. Info: 'SAXSNanodiscs' is a contributed component. Info: 'SAXSNanodiscsWithTags' is a contributed component. Info: 'SAXSPDB' is a contributed component. Info: 'SAXSCurve' is a contributed component. Info: 'SAXSNanodiscsFast' is a contributed component. Info: 'SAXSNanodiscsWithTagsFast' is a contributed component. Info: 'SAXSPDBFast' is a contributed component. Info: 'SAXSQMonitor' is a contributed component. CFLAGS= -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I@MCCODE_LIB@/miniconda3/include -L@MCCODE_LIB@/miniconda3/lib -lgsl -lgslcblas -DFUNNEL ----------------------------------------------------------- Generating single GPU kernel or single CPU section layout: ----------------------------------------------------------- Generating GPU/CPU -DFUNNEL layout: Component Sample2 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample2 Component Sample3 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Sample4 Component Sample5 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample5 Component Sample6 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample7 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Sample8 Component Sample9 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> CPU section from component Sample9 Component Sample10 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. Component Sample11 is NOACC, CPUONLY=1 -> FUNNEL mode enabled, SPLIT within buffer. -> GPU kernel from component Beamstop ----------------------------------------------------------- INFO: Recompiling: ./TestSAXS.out DEBUG: CMD: nvc -o ./TestSAXS.out ./TestSAXS.c -lm -ta:tesla,managed -DOPENACC -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL -I/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/include -L/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../miniconda3/lib -lgsl -lgslcblas -DFUNNEL "./TestSAXS.c", line 4248: warning: variable "randstate" was declared but never referenced unsigned long randstate[7]; ^ "./TestSAXS.c", line 4167: warning: variable "newlen" was declared but never referenced long newlen = 0; ^ "./TestSAXS.c", line 5869: warning: variable "ret" was declared but never referenced int ret=1,stat=0,plane_stat=0; ^ "./TestSAXS.c", line 6042: warning: variable "D" was declared but never referenced double A,B,C,D,k; ^ "./TestSAXS.c", line 8108: warning: variable "DummyChar" was declared but never referenced char DummyChar; ^ "./TestSAXS.c", line 8109: warning: variable "Atom" was declared but never referenced char Atom; ^ "./TestSAXS.c", line 8175: warning: variable "Line" was declared but never referenced char Line[256]; ^ "./TestSAXS.c", line 8189: warning: variable "AD" was declared but never referenced const double AD = 1 * 2.82e-13; ^ "./TestSAXS.c", line 9862: warning: variable "tc2" was set but never used Coords tc1, tc2; ^ "./TestSAXS.c", line 10945: warning: variable "status" was set but never used int status=0; ^ "./TestSAXS.c", line 11614: warning: variable "j" was declared but never referenced int i,j; ^ "./TestSAXS.c", line 12147: warning: variable "i" was declared but never referenced int i,j; ^ "./TestSAXS.c", line 12147: warning: variable "j" was declared but never referenced int i,j; ^ "./TestSAXS.c", line 12148: warning: variable "p1" was declared but never referenced double *p1,*p2,*p3; ^ "./TestSAXS.c", line 12148: warning: variable "p2" was declared but never referenced double *p1,*p2,*p3; ^ "./TestSAXS.c", line 12148: warning: variable "p3" was declared but never referenced double *p1,*p2,*p3; ^ "./TestSAXS.c", line 12700: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 12826: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 12954: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13093: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13262: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13427: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13429: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13430: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13599: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13601: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13602: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13753: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13756: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13757: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 13768: warning: variable "Slope" was declared but never referenced double Slope; ^ "./TestSAXS.c", line 13769: warning: variable "Offset" was declared but never referenced double Offset; ^ "./TestSAXS.c", line 13891: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 13893: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 13894: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 14066: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 14068: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 14069: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 14273: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 14275: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 14276: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 14454: warning: variable "l_1" was declared but never referenced double l_1; ^ "./TestSAXS.c", line 14457: warning: variable "Weight" was declared but never referenced double Weight; ^ "./TestSAXS.c", line 14458: warning: variable "IntensityPart" was declared but never referenced double IntensityPart; ^ "./TestSAXS.c", line 14653: warning: variable "k" was declared but never referenced int i,j,k; ^ "./TestSAXS.c", line 14654: warning: variable "e" was declared but never referenced double e,p2; ^ "./TestSAXS.c", line 17379: warning: variable "t" was declared but never referenced time_t t; ^ "./TestSAXS.c", line 17380: warning: variable "ct" was set but never used clock_t ct; ^ "./TestSAXS.c", line 1331: warning: variable "mcstartdate" was set but never used static long mcstartdate = 0; /* start simulation time */ ^ "./TestSAXS.c", line 2630: warning: function "strcpy_valid" was declared but never referenced static char *strcpy_valid(char *valid, char *original) ^ INFO: ===