loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-13 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-13 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Test_Absorption' (/zhome/89/0/38697/xTESTS/2022-11-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr): running on 10 nodes (master is 'n-62-29-13', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Loading geometry file (OFF/PLY): cube.off WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [n-62-29-13:21028] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-13:21028] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-13:21028] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 1.01667 [min] % 18 Trace ETA 57 [s] % 19 Trace ETA 57 [s] % 19 Trace ETA 56 [s] % 19 Trace ETA 56 [s] % Trace ETA 56 [s] % 19 19 Trace ETA 56 [s] % 19 Trace ETA 57 [s] % 19 Trace ETA 59 [s] % 18 Trace ETA 57 [s] % 19 20 20 20 20 20 20 20 20 19 19 21 21 21 21 21 21 21 21 20 20 22 22 22 22 22 22 22 22 21 21 23 23 23 23 23 23 23 23 22 22 24 24 24 24 24 24 24 24 23 23 25 25 25 25 25 25 25 25 24 24 26 26 26 26 26 26 26 26 25 25 27 27 27 27 27 27 27 27 26 26 28 28 28 28 28 28 28 28 27 27 29 29 29 29 29 29 29 29 28 28 30 30 30 30 30 30 30 30 29 29 31 31 31 31 31 31 31 31 30 32 32 32 30 32 32 32 32 32 31 33 33 33 33 31 33 33 33 33 32 34 34 34 34 34 32 34 34 34 33 35 35 35 35 35 35 33 35 35 36 36 34 36 36 36 36 36 34 36 37 37 37 35 37 37 37 37 37 35 38 38 38 36 38 38 38 38 38 36 39 39 39 39 37 39 39 39 39 37 40 40 40 40 38 40 40 40 40 38 41 41 41 41 39 41 41 41 41 39 42 42 42 42 42 40 42 42 42 40 43 43 43 43 43 43 41 43 43 44 44 41 44 44 44 44 42 44 44 45 45 45 42 45 45 45 43 45 45 46 46 46 43 46 46 46 46 44 46 47 47 47 47 44 47 47 47 47 45 48 48 48 48 45 48 48 48 48 46 49 49 49 49 49 46 49 49 49 47 50 50 50 50 50 50 47 50 50 48 51 51 51 51 51 51 48 51 51 49 52 52 52 52 52 52 52 49 52 50 53 53 53 53 53 53 53 53 50 54 54 51 54 54 54 54 54 54 51 55 55 52 55 55 55 55 55 55 56 52 56 56 53 56 56 56 56 56 57 57 53 57 54 57 57 57 57 57 58 58 58 54 55 58 58 58 58 58 59 59 59 55 56 59 59 59 59 59 60 60 60 56 60 57 60 60 60 60 61 61 61 61 57 58 61 61 61 61 62 62 62 62 58 59 62 62 62 62 63 63 63 63 60 59 63 63 63 63 64 64 64 64 61 64 64 60 64 65 64 65 65 65 65 65 62 61 65 66 66 65 66 66 66 66 63 62 66 67 67 66 67 67 67 67 64 67 63 68 68 67 68 68 68 68 65 68 69 69 64 68 69 69 69 69 69 66 70 70 69 65 70 70 70 70 70 71 67 71 70 71 66 71 71 71 71 72 72 68 71 72 67 72 72 72 72 73 73 69 72 73 68 73 73 73 73 74 74 70 73 74 69 74 74 74 74 75 75 74 75 71 75 70 75 75 75 76 76 75 76 72 76 71 76 76 76 77 77 77 76 73 77 77 72 77 77 78 78 78 77 74 78 78 73 78 78 79 79 79 78 75 79 79 79 74 79 80 80 80 79 76 80 80 80 80 75 81 81 81 80 81 77 81 81 81 82 82 76 82 81 82 78 82 82 82 83 83 77 83 82 83 79 83 83 83 84 84 84 78 83 84 84 80 84 84 85 85 85 79 84 85 85 81 85 85 86 86 86 80 85 86 86 82 86 87 86 87 87 86 81 87 87 83 87 88 87 88 88 87 82 88 88 88 89 84 88 89 89 88 89 83 89 90 89 89 90 85 90 89 90 90 84 91 90 90 91 86 91 90 91 91 85 92 91 91 92 87 92 91 92 92 86 93 92 93 92 88 93 92 93 93 94 87 93 94 93 94 89 93 94 94 95 94 95 94 88 95 90 94 95 95 96 96 95 95 89 96 91 96 95 96 97 97 96 96 97 90 92 97 96 97 98 98 97 97 98 91 93 98 97 98 99 99 98 98 99 92 94 99 98 99 99 99 Finally [Test_Absorption: 3]. Time: 56 [s] 93 95 99 Finally [Test_Absorption: 3]. Time: 56 [s] Finally [Test_Absorption: 3]. Time: 56 [s] Finally [Test_Absorption: 3]. Time: 56 [s] Finally [Test_Absorption: 3]. Time: 56 [s] Finally [Test_Absorption: 3]. Time: 56 [s] Finally [Test_Absorption: 3]. Time: 56 [s] 94 96 95 97 96 98 97 99 Finally [Test_Absorption: 3]. Time: 59 [s] 98 99 Save [Test_Absorption] Detector: emon_I=8.21881e-12 emon_ERR=5.87359e-15 emon_N=5.20501e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 1 [min] Detector: psd_I=8.67446e-09 psd_ERR=1.85408e-12 psd_N=4.39459e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 1 [min] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-11-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr in dataset 3