loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-11 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-11 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Test_Absorption' (/zhome/89/0/38697/xTESTS/2022-10-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr): running on 10 nodes (master is 'n-62-29-11', MPI version 3.1). [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Reusing input file 'Mn.txt' (Table_Read_Offset) Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Reusing input file 'Mn.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): cube.off sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [n-62-29-11:25260] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-11:25260] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-11:25260] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 53 [s] % 20 Trace ETA 54 [s] % 20 Trace ETA 54 [s] % 20 Trace ETA 53 [s] % 20 Trace ETA 53 [s] % 20 Trace ETA 52 [s] % 20 Trace ETA 54 [s] % 20 Trace ETA 53 [s] % 20 Trace ETA 53 [s] % 20 Trace ETA 55 [s] % 19 21 20 21 21 21 21 21 21 21 21 22 22 21 22 22 22 22 22 22 22 23 23 22 23 23 23 23 23 23 24 23 24 23 24 24 24 24 24 24 25 24 25 25 25 25 24 25 25 25 26 25 26 26 26 26 26 25 26 26 27 26 27 27 27 27 27 26 28 27 27 27 28 28 28 28 28 27 29 28 28 28 29 29 29 29 29 28 30 29 29 29 30 30 30 30 30 29 31 30 30 31 30 31 31 31 31 30 32 31 31 32 31 32 32 32 32 33 31 32 32 33 32 33 33 33 33 34 32 33 33 34 33 34 34 34 34 35 33 34 34 35 34 35 35 35 35 36 34 35 35 36 35 36 36 36 36 37 35 36 36 37 36 37 37 37 37 38 36 37 37 38 37 38 38 38 38 39 38 38 37 39 39 39 38 39 39 40 39 39 40 38 40 40 40 39 40 41 40 41 40 39 41 41 41 40 41 42 42 41 41 40 42 42 42 41 42 43 43 42 42 41 43 43 43 44 42 43 44 43 43 42 44 44 44 45 44 43 45 44 44 43 45 45 45 46 45 44 46 45 45 46 46 44 46 47 46 45 47 46 46 47 47 47 45 48 47 46 48 47 47 48 48 48 49 46 48 47 49 48 48 49 49 50 49 47 49 48 50 49 49 50 50 51 50 48 50 49 51 50 50 51 52 51 51 51 49 50 52 51 51 53 52 52 52 52 50 51 53 52 54 52 53 53 53 53 51 52 54 53 55 54 54 54 53 54 52 53 55 56 54 55 55 54 55 55 53 54 56 57 55 56 56 55 56 56 54 55 57 58 56 57 57 57 56 57 56 55 58 59 57 58 58 58 57 58 57 56 59 60 59 59 58 58 59 59 58 57 60 61 60 60 60 59 59 60 59 58 61 62 61 61 61 60 60 61 60 62 59 63 62 62 62 61 61 62 61 63 60 64 63 63 63 62 62 63 64 62 61 65 64 64 64 63 63 64 65 63 66 62 65 65 65 64 64 65 66 64 67 63 66 66 66 65 65 66 67 68 65 64 67 67 67 66 67 66 68 69 66 65 68 68 68 67 67 68 69 70 67 66 69 69 69 68 68 69 70 71 68 70 70 70 67 69 69 70 71 72 69 71 71 71 68 70 70 71 72 73 70 72 72 72 69 71 71 72 73 74 71 73 73 73 70 72 72 73 74 75 72 74 74 74 71 73 74 73 75 76 73 75 75 75 72 74 75 74 76 77 74 76 76 76 73 75 76 75 77 78 75 77 77 77 77 74 76 76 78 79 78 78 78 76 78 77 75 77 79 80 79 79 79 77 79 78 80 76 81 78 80 80 80 78 80 79 81 82 79 77 81 81 81 79 81 80 83 82 80 78 82 82 82 80 82 81 84 83 81 79 83 83 83 81 83 85 82 84 82 80 84 84 84 82 84 86 85 83 83 81 85 85 85 83 85 87 86 84 84 82 86 86 86 84 88 86 87 85 85 83 87 87 87 85 89 87 88 86 86 84 88 88 88 86 90 88 89 87 87 85 89 89 89 91 87 89 90 88 88 86 90 90 90 92 88 91 90 89 89 87 91 91 91 93 92 91 89 90 90 92 92 92 88 94 93 92 90 91 91 93 93 93 89 95 94 93 91 92 92 94 94 94 90 96 95 94 92 93 93 95 95 95 91 97 96 95 93 94 94 96 96 96 98 92 97 96 94 95 95 97 97 97 99 93 98 97 95 96 96 98 98 98 94 99 98 96 97 97 99 99 99 95 *** TRACE end *** 99 97 98 98 96 98 99 99 97 99 98 99 Save [Test_Absorption] Detector: emon_I=8.20777e-12 emon_ERR=5.86992e-15 emon_N=5.19957e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Detector: psd_I=8.67444e-09 psd_ERR=1.85408e-12 psd_N=4.39423e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-10-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr in dataset 3