loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json INFO: Using directory: "1" INFO: Using existing c-file: ./Airport_scannerII.c INFO: Using existing binary: ./Airport_scannerII.out WARNING: Ignoring invalid parameter: "Airport_scannerII.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-11 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-11 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Airp_scannerII' (/zhome/89/0/38697/xTESTS/2022-10-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr): running on 10 nodes (master is 'n-62-29-11', MPI version 3.1). [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/book.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): book.ply Number of vertices: 2853 [Airp_scannerII] Initialize [Airp_scannerII] Initialize [Airp_scannerII] Initialize Number of polygons: 5722 sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry book.ply will be applied! Bounding box dimensions for geometry book.ply: sample_scan: Volume[1], material='book.txt' geometry='book.ply' Length=0.239599 (100.000%) Width= 0.029804 (100.000%) Depth= 0.164529 (100.000%) sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/h2o2.dat' (Table_Read_Offset) Loading geometry file (OFF/PLY): h2o2.ply Number of vertices: 406 Number of polygons: 808 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry h2o2.ply will be applied! Bounding box dimensions for geometry h2o2.ply: Length=0.126295 (100.000%) Width= 0.046911 (100.000%) Depth= 0.090087 (100.000%) sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/H2O.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): water.ply sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Number of vertices: 818 Number of polygons: 1632 sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry water.ply will be applied! Bounding box dimensions for geometry water.ply: Length=0.066238 (100.000%) Width= 0.058313 (100.000%) Depth= 0.217547 (100.000%) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/ethanol.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): whiskey.ply Number of vertices: 616 Number of polygons: 1228 sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry whiskey.ply will be applied! Bounding box dimensions for geometry whiskey.ply: Length=0.082601 (100.000%) Width= 0.076881 (100.000%) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Depth= 0.141927 (100.000%) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Cu.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): wire.ply sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Number of vertices: 2584 Number of polygons: 5438 sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry wire.ply will be applied! Bounding box dimensions for geometry wire.ply: sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Length=0.173456 (100.000%) Width= 0.078031 (100.000%) Depth= 0.145752 (100.000%) sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): luggage.off sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Number of vertices: 37707 Number of polygons: 84521 sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry luggage.off will be applied! sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' Bounding box dimensions for geometry luggage.off: Length=0.324186 (100.000%) Width= 0.260044 (100.000%) Depth= 0.540097 (100.000%) sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' [n-62-29-11:15066] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-11:15066] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-11:15066] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 2.38083 [h] % 0 Trace ETA 2.08333 [h] % 0 Trace ETA 2.08333 [h] % 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 6 7 7 7 7 7 7 7 7 7 7 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 9 9 9 9 10 10 10 10 10 10 10 10 10 10 11 11 11 11 11 11 11 12 12 11 11 11 12 12 12 13 13 12 12 12 12 12 13 13 13 14 14 13 13 13 14 13 13 14 14 15 15 14 14 15 15 14 14 14 15 16 16 16 16 15 15 16 15 15 15 17 17 17 17 16 16 17 16 16 16 18 18 18 18 17 17 18 17 17 17 19 19 19 19 18 18 19 18 18 18 20 20 19 20 19 20 19 19 20 19 21 21 20 20 21 21 20 20 21 20 22 22 21 21 22 22 21 21 22 23 21 23 22 22 23 22 22 23 23 24 24 22 23 23 23 23 24 24 24 25 25 23 24 24 24 24 25 25 25 26 26 25 25 24 25 25 26 26 26 27 27 26 26 26 26 25 27 27 27 28 28 27 27 27 27 26 28 28 28 29 29 28 28 28 28 29 29 27 29 30 30 29 29 29 29 30 30 28 30 31 30 31 30 30 30 31 31 29 31 32 31 31 32 31 31 32 32 30 32 33 32 32 33 32 32 33 33 33 31 33 33 34 34 33 33 34 34 34 34 34 32 35 34 34 35 35 35 35 35 35 33 35 35 36 36 36 36 36 36 36 36 36 34 37 37 37 37 37 37 37 37 37 35 38 38 38 38 38 38 38 38 38 36 39 39 39 39 39 39 39 39 39 37 40 40 40 40 40 40 40 40 38 41 41 40 41 41 41 41 41 42 42 39 42 42 41 42 42 41 42 43 43 43 40 43 43 43 43 42 42 44 44 44 44 41 44 44 44 43 45 45 43 45 45 45 45 42 45 46 46 44 46 46 46 44 46 43 46 47 47 47 47 47 47 45 45 44 47 48 48 48 48 48 48 48 45 46 49 49 46 49 49 49 49 49 50 50 46 47 50 50 47 50 50 50 51 51 47 51 51 51 48 51 48 52 52 51 48 52 52 52 52 49 53 53 52 49 53 53 49 53 53 54 54 53 50 54 54 50 50 54 54 55 55 54 55 55 51 51 55 51 55 56 56 55 56 56 56 52 56 52 57 57 52 56 57 57 57 58 53 58 57 53 57 58 58 53 58 59 59 58 54 59 58 59 54 54 59 60 60 59 55 60 60 59 61 55 60 61 55 60 56 61 61 60 62 62 61 61 56 62 62 56 57 61 63 63 62 62 63 63 57 58 62 57 64 64 63 63 64 64 63 59 65 58 65 64 58 64 65 65 64 60 66 66 65 59 65 66 59 66 65 67 67 61 66 67 66 67 60 60 66 68 68 62 67 68 67 68 69 67 61 69 61 63 68 69 69 68 70 70 68 62 69 64 70 62 70 69 71 71 69 70 71 71 65 63 70 63 72 72 70 71 72 72 66 71 73 64 73 64 71 73 72 73 72 67 74 74 72 65 65 74 74 73 73 75 68 75 73 75 75 66 74 66 76 74 76 69 74 76 76 75 77 67 77 75 67 70 75 77 77 76 78 78 76 68 71 76 68 78 78 77 79 79 77 72 79 77 79 69 69 78 80 80 78 80 80 73 78 81 79 70 81 70 79 81 81 79 74 82 80 82 80 71 71 82 82 80 83 75 83 81 81 83 72 83 81 72 84 84 76 82 82 84 84 85 82 73 85 83 77 73 83 85 85 86 83 86 84 74 78 84 74 86 86 87 87 84 85 79 85 87 75 87 88 75 88 85 86 80 88 86 88 89 76 89 86 76 87 89 89 87 81 90 90 87 77 88 77 90 90 88 91 82 91 88 89 91 78 91 89 92 78 92 83 89 90 92 92 93 90 79 93 84 79 90 91 93 93 94 91 94 85 80 91 80 92 94 94 95 95 92 86 92 81 95 93 95 96 81 96 93 87 93 96 94 96 97 82 97 94 82 94 97 88 97 95 98 98 95 83 83 98 95 98 96 89 99 99 96 84 99 99 96 97 84 90 97 *** TRACE end *** 97 98 85 91 85 98 98 99 92 86 99 86 99 93 87 87 94 88 88 95 89 89 96 90 97 90 91 98 91 99 92 92 93 93 94 94 95 95 96 96 97 97 98 98 99 99 Save [Airp_scannerII] Detector: psd0_I=0.00103487 psd0_ERR=1.46354e-07 psd0_N=5e+07 "psd0.dat" Detector: emon_I=0.00103487 emon_ERR=1.46354e-07 emon_N=5e+07 "emon.dat" Detector: psd2_I=0.000643303 psd2_ERR=1.13545e-07 psd2_N=3.82656e+07 "psd2.dat" Finally [Airp_scannerII: 1]. Time: 2.36333 [h] Detector: psd_far_I=1.17632e-05 psd_far_ERR=1.44371e-08 psd_far_N=1.53234e+06 "psdfar.dat" Finally [Airp_scannerII: 1]. Time: 2.36333 [h] Finally [Airp_scannerII: 1]. Time: 2.36333 [h] Finally [Airp_scannerII: 1]. Time: 2.36333 [h] Finally [Airp_scannerII: 1]. Time: 2.36333 [h] Finally [Airp_scannerII: 1]. Time: 2.36333 [h] Finally [Airp_scannerII: 1]. Time: 2.36333 [h] Finally [Airp_scannerII: 1]. Time: 2.36333 [h] Finally [Airp_scannerII: 1]. Time: 2.36333 [h] Finally [Airp_scannerII: 1]. Time: 2.36333 [h] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-10-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr in dataset 1