loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === Simulation 'Test_Absorption' (/home/nexmap/pkwi/xTESTS/2022-10-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Loading geometry file (OFF/PLY): cube.off Number of vertices: 8 sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Trace ETA 31 [s] % 34 Trace ETA 32 [s] % 34 Trace ETA 32 [s] % 33 Trace ETA 32 [s] % 34 Trace ETA 31 [s] % 34 Trace ETA 34 [s] % 32 Trace ETA 32 [s] % 34 Trace ETA 33 [s] % 33 Trace ETA 32 [s] % 33 Trace ETA 33 [s] % 33 Trace ETA 32 [s] % 33 Trace ETA 33 [s] % 33 Trace ETA 32 [s] % 33 Trace ETA 34 [s] % 32 Trace ETA 32 [s] % 33 Trace ETA 32 [s] % 33 35 35 35 35 34 35 34 34 34 34 34 34 34 34 33 33 36 36 36 36 35 36 35 35 35 35 35 35 35 35 34 34 37 37 37 37 37 36 36 36 36 36 36 36 36 36 35 35 38 38 38 38 38 37 37 37 37 37 37 37 37 37 36 36 39 39 39 39 39 38 38 38 38 38 38 38 38 38 37 37 40 40 40 40 40 39 39 39 39 39 39 39 39 39 38 38 41 41 41 41 41 40 40 40 40 40 40 40 40 40 39 39 42 42 42 42 42 41 41 41 41 41 41 41 41 41 40 40 43 43 43 43 43 42 42 42 42 42 42 42 42 42 41 41 44 44 44 44 44 43 43 43 43 43 43 43 43 43 42 42 45 45 45 45 45 44 44 44 44 44 44 44 44 44 43 43 46 46 46 46 46 45 45 45 45 45 45 45 45 45 44 44 47 47 47 47 47 46 46 46 46 46 46 46 46 46 45 45 48 48 48 48 48 47 47 47 47 47 47 47 47 47 46 46 49 49 49 49 49 48 48 48 48 48 48 48 48 48 50 50 47 47 50 50 50 49 49 49 49 49 49 49 49 49 51 51 48 48 51 51 51 50 50 50 50 50 50 50 50 50 52 52 52 49 49 52 52 51 51 51 51 51 51 51 51 51 53 53 53 53 53 50 50 52 52 52 52 52 52 52 52 52 54 54 54 54 54 51 51 53 53 53 53 53 53 53 53 53 55 55 55 55 55 52 54 54 52 54 54 54 54 54 54 54 56 56 56 56 56 55 55 53 53 55 55 55 55 55 55 55 57 57 57 57 57 56 56 54 54 56 56 56 56 56 56 58 58 56 58 58 58 57 57 55 55 57 57 57 57 57 57 59 59 57 59 59 59 58 58 56 58 56 58 58 58 60 60 58 58 58 60 60 60 59 59 59 57 59 57 59 59 61 61 59 59 59 61 61 61 60 60 60 60 58 60 58 60 62 62 60 60 60 62 62 62 61 61 61 61 61 59 59 61 63 63 61 61 61 63 63 63 62 62 62 62 62 60 62 60 64 64 62 62 62 64 64 64 63 63 63 63 63 63 61 65 65 61 63 63 65 63 65 65 64 64 64 64 64 64 66 66 62 62 64 64 66 64 66 66 65 65 65 65 65 67 65 67 63 63 65 67 65 67 65 67 66 66 66 66 66 68 68 66 64 64 68 66 66 68 66 68 67 67 67 67 69 67 69 67 65 65 69 67 69 67 69 67 68 68 68 68 70 70 68 68 66 70 66 70 68 70 68 68 69 69 69 69 71 71 69 69 71 67 71 67 71 69 69 69 70 70 70 72 70 72 70 70 72 72 68 72 68 70 70 70 71 71 71 73 73 71 71 71 73 73 73 69 71 71 69 71 72 72 72 74 74 72 72 72 74 74 74 72 70 72 70 72 73 73 75 73 75 73 73 73 75 75 75 73 73 71 71 73 74 74 76 76 74 74 74 74 76 76 76 74 74 75 72 74 75 72 77 77 75 75 75 75 77 77 77 75 75 76 76 75 73 73 78 78 76 76 76 76 78 78 78 76 77 76 77 76 74 74 79 79 77 77 77 77 79 79 79 78 77 77 78 77 75 75 80 80 78 78 78 78 80 80 80 79 79 78 78 78 81 76 81 76 79 79 79 79 81 81 81 80 80 79 79 79 82 82 77 77 80 80 80 80 82 82 82 81 81 80 80 83 80 83 78 78 81 81 81 83 81 83 83 82 82 81 81 84 84 81 79 82 79 82 82 84 82 84 84 83 83 85 82 82 85 82 83 80 80 83 83 85 83 85 85 84 84 86 86 83 83 83 84 81 84 81 84 86 84 86 86 85 85 87 87 84 84 84 85 85 82 82 87 85 87 85 87 86 86 88 88 85 85 85 86 86 83 88 86 83 88 86 88 87 87 89 89 86 86 86 87 87 89 84 87 89 84 87 89 88 88 90 90 87 87 87 88 88 90 88 85 90 85 88 90 91 89 89 91 88 88 88 89 89 91 89 91 86 91 89 86 92 90 90 92 89 89 89 90 90 92 92 90 92 87 90 87 93 93 91 91 90 90 90 91 91 93 93 91 93 91 88 88 94 94 92 92 91 91 92 91 92 94 94 92 94 92 89 89 95 95 93 93 92 92 93 92 95 93 95 93 95 93 90 96 96 90 94 94 93 93 94 93 96 94 96 94 96 94 97 91 97 95 95 91 94 94 95 94 97 95 97 95 97 95 98 98 92 96 96 92 95 95 96 98 95 96 98 98 96 96 99 99 97 97 93 93 Finally [Test_Absorption: 3]. Time: 30 [s] 96 97 96 99 96 97 99 99 97 97 98 98 94 94 98 97 97 Finally [Test_Absorption: 3]. Time: 31 [s] 97 98 98 98 99 99 95 95 99 98 98 98 99 99 99 Finally [Test_Absorption: 3]. Time: 31 [s] 96 Finally [Test_Absorption: 3]. Time: 31 [s] 96 Finally [Test_Absorption: 3]. Time: 31 [s] 99 99 99 97 97 Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] 98 98 99 99 Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] Save [Test_Absorption] Detector: emon_I=8.21774e-12 emon_ERR=5.8728e-15 emon_N=5.20462e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] Detector: psd_I=8.67468e-09 psd_ERR=1.85411e-12 psd_N=4.39476e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 32 [s] INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2022-10-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr in dataset 3