loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-18 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-18 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Test_Absorption' (/zhome/89/0/38697/xTESTS/2022-08-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr): running on 10 nodes (master is 'n-62-29-18', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Reusing input file 'Mn.txt' (Table_Read_Offset) INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done Warning: sample_scan2: Invalid inner volume specification. Ignoring. INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Reusing input file 'Mn.txt' (Table_Read_Offset) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Loading geometry file (OFF/PLY): cube.off Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [n-62-29-18:17628] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-18:17628] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-18:17628] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 55 [s] % 19 Trace ETA 53 [s] % 20 Trace ETA 54 [s] % 20 Trace ETA 56 [s] % 19 Trace ETA 54 [s] % 20 Trace ETA 53 [s] % 20 Trace ETA 53 [s] % 20 Trace ETA 54 [s] % 20 Trace ETA 56 [s] % 19 Trace ETA 55 [s] % 19 20 20 21 21 21 20 20 21 21 21 21 21 22 22 22 21 22 21 22 22 22 22 23 23 23 22 23 22 23 23 23 24 24 23 24 23 24 24 23 24 25 25 24 25 24 24 25 25 24 25 26 26 26 25 25 25 26 26 26 25 27 27 27 26 26 26 27 27 27 26 28 28 28 27 27 27 28 28 28 27 29 29 29 28 28 29 28 29 29 28 30 30 30 29 29 30 29 30 30 29 31 31 31 30 30 31 30 31 31 30 32 32 32 31 31 32 32 31 32 33 33 31 33 32 32 33 33 33 32 34 34 34 32 33 33 34 34 34 33 35 35 35 33 34 34 35 35 35 34 36 36 36 34 35 35 36 36 36 35 37 37 37 35 36 36 37 37 37 38 36 38 38 36 37 37 38 38 38 39 39 37 39 37 38 38 39 39 39 40 40 40 38 38 39 39 40 40 40 41 41 41 39 39 41 40 40 41 41 42 42 42 40 40 42 41 41 42 42 43 43 43 41 41 43 42 42 43 43 44 44 44 42 42 44 43 43 44 45 45 44 45 43 45 43 44 44 45 46 46 45 46 44 46 44 45 47 47 45 46 46 47 45 47 45 48 48 46 46 47 47 48 46 48 49 49 46 47 48 47 48 49 47 49 50 50 47 48 49 49 48 50 48 50 51 51 50 51 49 50 49 48 49 51 52 52 52 51 50 50 51 49 50 52 53 53 53 52 52 51 51 50 51 53 54 54 54 53 53 52 52 51 52 54 55 55 55 54 54 53 53 52 55 56 53 56 56 55 55 54 54 53 57 56 54 57 57 56 56 55 55 54 58 57 58 55 58 57 57 56 56 55 59 58 59 56 59 58 58 57 57 56 60 59 60 60 57 59 59 58 58 57 61 61 60 61 58 60 60 59 59 58 62 62 61 62 59 61 61 60 60 59 63 63 62 63 62 60 62 61 61 60 64 64 63 64 63 61 63 62 62 65 61 65 64 65 64 64 62 63 63 66 66 62 65 66 65 65 63 64 64 67 67 63 66 67 66 66 64 65 65 68 68 68 64 67 67 67 65 66 66 69 69 69 68 65 68 68 66 67 67 70 70 70 69 66 69 69 67 71 68 68 71 71 70 67 70 70 68 72 69 69 72 72 71 68 71 71 69 73 70 73 70 73 72 72 69 72 74 70 74 71 71 74 73 73 70 73 75 71 75 72 72 75 74 74 71 74 76 72 76 76 73 73 75 75 75 72 77 77 73 77 74 74 76 76 76 73 78 78 74 78 75 75 77 77 77 74 79 79 79 75 78 76 76 78 78 80 75 80 80 76 79 77 77 79 79 81 76 81 81 77 80 78 78 80 80 82 77 82 82 81 78 79 79 81 81 83 78 83 83 82 79 80 80 82 82 84 84 79 84 83 80 81 81 83 83 85 85 85 80 84 81 82 82 84 84 86 86 86 81 85 82 83 83 85 87 85 87 87 82 86 84 84 83 86 88 86 88 88 83 87 85 85 84 87 89 87 89 89 84 88 86 86 85 88 90 88 90 90 89 85 87 87 86 89 91 89 91 91 90 86 88 88 90 87 92 90 92 92 91 87 89 89 93 91 88 91 93 93 92 88 94 92 90 90 89 92 94 94 93 89 95 93 91 91 90 93 95 95 94 90 96 94 92 92 96 94 91 96 95 91 97 95 93 93 97 95 92 97 96 98 92 96 94 94 98 96 93 98 97 99 93 97 95 95 99 97 94 99 98 94 98 96 96 98 95 99 95 99 97 97 99 96 96 98 98 97 97 99 99 98 98 *** TRACE end *** 99 99 Save [Test_Absorption] Detector: emon_I=8.20777e-12 emon_ERR=5.86992e-15 emon_N=5.19957e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Detector: psd_I=8.67444e-09 psd_ERR=1.85408e-12 psd_N=4.39423e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] Finally [Test_Absorption: 3]. Time: 55 [s] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-08-01/McXtrace_CPU_MPICC_KISS_5e7/Test_Absorption/Test_Absorption.instr in dataset 3