loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === Simulation 'Test_Absorption' (/home/nexmap/pkwi/xTESTS/2022-08-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Loading geometry file (OFF/PLY): cube.off Number of vertices: 8 Number of polygons: 6 sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Trace ETA 30 [s] % 35 Trace ETA 30 [s] % 36 Trace ETA 30 [s] % 35 Trace ETA 29 [s] % 36 Trace ETA 31 [s] % 35 Trace ETA 33 [s] % 33 Trace ETA 30 [s] % 36 Trace ETA 30 [s] % 36 Trace ETA 30 [s] % 36 Trace ETA 32 [s] % 33 Trace ETA 30 [s] % 35 Trace ETA 30 [s] % 35 Trace ETA 32 [s] % 34 Trace ETA 30 [s] % 35 Trace ETA 30 [s] % 36 Trace ETA 31 [s] % 35 37 37 37 37 36 36 37 37 36 36 36 36 36 35 34 34 38 38 38 38 37 38 37 38 37 37 37 37 37 36 35 35 39 39 39 39 39 38 38 39 38 38 38 38 38 37 36 36 40 40 40 40 40 39 39 40 39 39 39 39 39 38 37 37 41 41 41 41 41 40 41 40 40 40 40 40 40 39 38 38 42 42 42 42 42 42 41 41 41 41 41 41 41 40 39 39 43 43 43 43 43 43 42 42 42 42 42 42 42 41 40 40 44 44 44 44 44 44 43 43 43 43 43 43 43 42 41 41 45 45 45 45 45 45 44 44 44 44 44 44 44 43 42 46 42 46 46 46 46 46 45 45 45 45 45 45 45 44 43 47 47 43 47 47 47 47 46 46 46 46 46 46 46 45 44 48 48 48 48 44 48 48 47 47 47 47 47 47 47 46 49 45 49 49 49 49 49 48 45 48 48 48 48 48 48 50 47 50 46 50 50 50 50 49 49 46 49 49 49 49 49 51 48 51 47 51 51 51 51 50 50 50 50 50 47 50 50 52 52 49 48 52 52 52 52 51 51 51 51 51 48 51 51 53 53 50 53 53 53 49 53 52 52 52 52 52 49 52 52 54 54 51 54 54 54 54 50 53 53 53 53 53 50 53 53 55 55 55 52 55 55 55 54 51 54 54 54 54 56 54 54 51 56 56 56 56 53 56 55 55 52 55 55 55 57 55 55 52 57 57 57 57 57 54 56 56 56 53 56 56 58 56 56 58 53 58 58 58 58 55 57 57 57 57 54 57 59 57 57 59 54 59 59 59 59 58 56 58 58 58 58 55 60 60 58 58 60 60 55 60 60 59 59 57 59 59 59 61 56 61 59 59 61 61 61 56 61 60 60 58 60 60 62 60 57 62 60 60 62 62 62 62 57 61 61 61 59 63 61 61 58 63 61 61 63 63 63 63 62 58 62 62 64 60 62 62 64 59 62 62 64 64 64 64 63 63 59 65 63 63 61 63 65 60 63 63 65 65 65 65 64 64 66 64 60 64 64 62 66 61 64 64 66 66 66 66 65 65 67 65 65 65 61 63 67 62 65 65 67 67 67 67 66 68 66 66 66 66 68 62 64 63 66 68 66 68 68 68 67 69 67 67 67 67 69 65 63 69 67 67 69 64 69 69 68 70 68 68 68 68 70 66 64 70 70 68 68 65 70 70 71 69 69 69 69 71 69 67 65 71 71 69 69 71 71 66 72 70 70 70 70 72 70 68 72 66 72 70 70 72 72 73 67 71 71 71 73 71 71 69 73 73 67 73 71 71 73 74 72 68 72 72 74 72 72 74 70 74 74 75 74 72 72 68 73 69 73 73 75 73 73 75 75 71 75 76 75 73 73 69 74 70 74 76 74 74 74 76 76 77 72 76 76 74 74 75 70 75 71 77 75 75 75 77 77 78 77 77 73 75 75 76 76 71 78 72 76 76 76 78 78 79 78 78 74 76 76 77 77 79 72 77 73 77 77 79 79 80 79 79 75 77 77 78 78 80 78 73 74 78 78 80 81 80 80 80 76 79 78 78 81 79 79 79 75 74 79 81 82 81 81 81 80 79 79 77 82 80 80 80 76 80 75 82 83 82 82 82 81 80 80 78 83 81 81 81 81 77 76 84 83 83 83 83 82 81 81 84 79 82 82 82 82 85 78 84 77 84 84 84 83 85 82 82 83 80 83 83 83 86 85 79 85 78 85 85 84 86 83 83 84 81 84 84 87 84 86 86 80 86 86 79 85 87 84 84 85 82 85 85 88 85 87 87 81 87 87 80 88 86 85 85 86 86 83 86 89 86 88 88 88 82 88 89 81 87 87 86 86 87 84 90 87 87 89 89 89 89 83 90 88 82 88 87 87 88 91 85 88 90 88 90 90 90 84 91 89 83 89 88 88 89 92 89 86 91 89 91 91 91 92 85 90 90 84 89 89 93 90 90 87 92 90 92 92 92 93 91 86 91 90 90 94 85 91 91 93 88 93 91 93 93 94 92 87 92 95 91 91 92 86 92 94 94 92 89 94 94 95 93 88 93 96 92 92 93 87 93 95 95 93 90 95 95 96 94 89 94 97 93 93 94 94 96 96 88 94 96 91 96 97 95 98 95 90 94 94 95 97 95 97 95 89 97 92 97 98 96 99 Finally [Test_Absorption: 3]. Time: 29 [s] 96 91 95 95 96 98 96 98 96 98 90 98 99 93 97 97 92 97 96 96 99 97 99 97 99 99 91 94 98 98 98 93 97 97 98 98 92 95 99 99 99 Finally [Test_Absorption: 3]. Time: 30 [s] Finally [Test_Absorption: 3]. Time: 30 [s] 98 98 94 99 99 Finally [Test_Absorption: 3]. Time: 30 [s] 96 93 99 99 95 97 94 Finally [Test_Absorption: 3]. Time: 31 [s] Finally [Test_Absorption: 3]. Time: 31 [s] 96 98 95 97 99 96 98 Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] 97 99 Finally [Test_Absorption: 3]. Time: 32 [s] 98 99 Save [Test_Absorption] Detector: emon_I=8.21774e-12 emon_ERR=5.8728e-15 emon_N=5.20462e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Detector: psd_I=8.67468e-09 psd_ERR=1.85411e-12 psd_N=4.39476e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 33 [s] INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2022-08-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr in dataset 3