INFO: Using directory: "3" INFO: Using existing c-file: ./Test_Absorption.c INFO: Using existing binary: ./Test_Absorption.out WARNING: Ignoring invalid parameter: "Test_Absorption.instr" INFO: === Simulation 'Test_Absorption' (/home/nexmap/pkwi/xTESTS/2022-07-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr): running on 16 nodes (master is 'elearn1.fysik.dtu.dk', MPI version 3.1). [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize [Test_Absorption] Initialize Opening input file '/home/nexmap/pkwi/McXtrace/mcxtrace/1.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Mn.txt' (Table_Read_Offset) [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt Loading geometry file (OFF/PLY): cube.off Number of vertices: 8 Number of polygons: 6 Warning: Aspect ratio of the geometry cube.off was modified. If you want to keep the original proportions, specifiy only one of the dimensions. Bounding box dimensions for geometry cube.off: Length=0.001000 (0.100%) Width= 0.001000 (0.100%) Depth= 0.000100 (0.010%) sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' [Test_Absorption] Initialize [Test_Absorption] Initialize WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. WARNING: (Table_Rebin): Rebinning table from Mn.txt would exceed 1M rows. Skipping. Warning: sample_scan2: Invalid inner volume specification. Ignoring. sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan1: Rebinning material data (Mn.txt) for faster tracing...done INFO: sample_scan2: Setting rho_o=7.43 from Mn.txt sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' sample_scan3: Volume[1], material='Mn.txt' geometry='cube.off' Trace ETA 31 [s] % 34 Trace ETA 31 [s] % 34 Trace ETA 31 [s] % 34 Trace ETA 34 [s] % 32 Trace ETA 32 [s] % 33 Trace ETA 31 [s] % 34 Trace ETA 32 [s] % 34 Trace ETA 31 [s] % 35 Trace ETA 32 [s] % 33 Trace ETA 31 [s] % 35 Trace ETA 31 [s] % 35 Trace ETA 32 [s] % 34 Trace ETA 32 [s] % 34 Trace ETA 33 [s] % 33 Trace ETA 30 [s] % 35 Trace ETA 31 [s] % 35 35 35 36 36 35 35 36 36 36 35 35 34 35 34 34 33 37 37 36 36 37 36 36 37 37 36 36 36 35 35 35 34 38 38 37 37 38 38 37 37 38 37 37 37 36 36 36 35 39 39 38 38 39 39 38 39 38 38 38 38 37 37 37 36 40 40 39 39 40 40 39 40 39 39 39 39 38 38 38 37 41 41 40 41 40 41 41 40 40 40 40 40 39 39 39 38 42 42 41 42 41 42 41 42 41 41 41 41 40 40 40 39 43 43 42 43 43 42 42 43 42 42 42 42 41 41 41 40 44 44 43 44 44 43 44 43 43 43 43 43 42 42 42 41 45 45 44 45 45 44 45 44 44 44 44 44 43 43 43 46 42 46 45 46 46 45 46 45 45 45 45 45 44 44 44 47 43 47 46 47 47 46 47 46 46 46 46 46 45 45 45 48 48 47 48 48 48 47 47 44 47 47 47 47 46 46 49 46 49 48 49 49 48 49 48 48 45 48 48 48 47 47 50 47 50 49 50 50 49 50 49 49 46 49 49 49 48 48 51 48 51 51 50 51 51 50 50 50 47 50 50 50 49 49 52 52 49 52 51 52 52 51 51 51 51 48 51 51 50 50 53 53 53 52 53 53 52 52 50 52 52 52 49 52 51 54 51 54 54 53 54 54 53 53 51 53 53 53 53 50 55 52 52 55 55 54 55 55 54 54 54 52 54 54 54 51 56 53 53 56 56 56 55 56 55 55 55 53 55 55 55 57 52 54 54 57 57 57 56 57 56 56 56 54 56 56 56 58 55 53 55 58 58 58 57 58 57 57 57 55 57 57 59 57 56 54 59 56 59 59 58 59 58 58 58 56 58 58 60 58 57 60 57 55 60 60 59 60 59 59 59 57 59 59 61 59 58 61 61 58 61 60 61 60 60 56 60 60 58 62 60 60 62 59 62 62 61 62 59 61 61 57 61 63 61 61 59 61 63 60 63 63 62 63 62 62 60 62 58 64 62 62 60 62 64 64 61 64 63 64 63 63 61 63 59 65 63 63 61 63 65 65 65 65 64 62 64 64 62 64 60 66 64 64 62 64 66 66 66 66 65 65 63 65 63 65 67 61 65 65 65 63 67 67 67 67 66 66 66 64 66 64 68 62 66 66 66 68 64 68 68 68 67 67 67 65 67 65 69 67 63 67 69 67 65 69 69 69 68 68 68 66 68 66 70 68 68 64 70 68 70 70 70 66 69 69 69 67 69 67 71 69 69 65 71 69 71 71 71 70 70 70 67 68 70 72 68 70 70 72 66 70 72 72 72 71 71 71 68 71 69 73 69 71 71 73 73 71 73 73 67 72 72 72 69 72 70 74 70 72 72 74 74 74 74 72 73 73 73 68 73 70 75 71 71 73 75 73 75 75 75 74 73 74 74 69 74 76 71 72 72 74 76 74 76 76 76 75 74 75 75 70 77 75 72 73 73 75 77 75 77 77 77 76 76 76 75 78 76 71 73 74 74 76 78 76 78 78 78 77 77 77 76 79 77 72 75 74 75 79 77 77 79 79 79 78 78 78 77 80 78 76 73 75 76 80 78 78 80 80 80 79 79 79 78 81 79 77 74 76 77 81 79 81 79 81 81 80 80 80 82 79 80 78 77 75 82 78 80 82 82 82 80 81 81 81 83 80 81 79 78 76 83 79 81 83 83 83 81 82 82 82 84 81 82 80 84 79 77 80 82 84 84 84 83 82 83 83 85 82 83 81 85 80 81 83 85 78 85 85 84 83 84 86 84 83 84 82 86 81 86 84 82 86 86 85 79 84 87 85 85 85 84 83 87 87 85 87 87 82 83 86 88 86 85 86 80 86 85 88 84 88 88 88 86 87 83 84 89 87 87 86 81 87 86 89 85 89 89 89 87 88 90 85 88 84 88 87 82 88 87 90 86 90 90 90 91 89 88 89 89 86 88 85 89 83 88 91 87 91 91 91 92 90 89 90 90 87 89 86 90 89 84 92 88 92 92 93 92 91 90 91 91 90 88 87 91 90 85 93 93 94 89 93 93 92 91 92 92 91 89 88 92 91 86 94 94 95 94 94 90 93 93 92 93 92 90 93 89 92 87 95 96 95 95 95 94 91 94 94 93 93 91 94 90 93 96 88 97 96 96 96 95 92 95 95 94 94 92 95 91 94 97 98 89 97 97 97 96 93 96 96 95 95 96 93 92 95 98 99 98 98 98 90 97 97 97 94 96 Finally [Test_Absorption: 3]. Time: 30 [s] 96 97 94 96 93 99 99 99 99 98 91 98 98 95 97 97 98 95 97 94 99 99 99 92 Finally [Test_Absorption: 3]. Time: 30 [s] 96 98 98 99 96 98 95 93 97 99 99 97 99 96 Finally [Test_Absorption: 3]. Time: 31 [s] Finally [Test_Absorption: 3]. Time: 31 [s] 98 94 98 Finally [Test_Absorption: 3]. Time: 31 [s] Finally [Test_Absorption: 3]. Time: 31 [s] 97 99 95 Finally [Test_Absorption: 3]. Time: 31 [s] 99 98 96 99 97 Finally [Test_Absorption: 3]. Time: 32 [s] Finally [Test_Absorption: 3]. Time: 32 [s] 98 99 Save [Test_Absorption] Detector: emon_I=8.21774e-12 emon_ERR=5.8728e-15 emon_N=5.20462e+06 "emon.dat" Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Finally [Test_Absorption: 3]. Time: 33 [s] Detector: psd_I=8.67468e-09 psd_ERR=1.85411e-12 psd_N=4.39476e+07 "psd.dat" Finally [Test_Absorption: 3]. Time: 33 [s] INFO: Placing instr file copy /home/nexmap/pkwi/xTESTS/2022-07-01/McXtrace-1.x_CPU_MPICC_5e7/Test_Absorption/Test_Absorption.instr in dataset 3 loading system configuration loading override configuration from /home/nexmap/pkwi/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace-1.x_CPU_MPICC/mccode_config.json