INFO: Using directory: "1" INFO: Using existing c-file: ./Airport_scannerII.c INFO: Using existing binary: ./Airport_scannerII.out WARNING: Ignoring invalid parameter: "Airport_scannerII.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-29-15 Local adapter: mlx4_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-29-15 Local device: mlx4_0 -------------------------------------------------------------------------- Simulation 'Airp_scannerII' (/zhome/89/0/38697/xTESTS/2022-07-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr): running on 10 nodes (master is 'n-62-29-14', MPI version 3.1). [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/book.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): book.ply [Airp_scannerII] Initialize [Airp_scannerII] Initialize Number of vertices: 2853 Number of polygons: 5722 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry book.ply will be applied! Bounding box dimensions for geometry book.ply: Length=0.239599 (100.000%) Width= 0.029804 (100.000%) Depth= 0.164529 (100.000%) sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/h2o2.dat' (Table_Read_Offset) Loading geometry file (OFF/PLY): h2o2.ply Number of vertices: 406 Number of polygons: 808 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry h2o2.ply will be applied! Bounding box dimensions for geometry h2o2.ply: Length=0.126295 (100.000%) Width= 0.046911 (100.000%) Depth= 0.090087 (100.000%) sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/H2O.txt' (Table_Read_Offset) [Airp_scannerII] Initialize Loading geometry file (OFF/PLY): water.ply sample_scan: Volume[1], material='book.txt' geometry='book.ply' [Airp_scannerII] Initialize Number of vertices: 818 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Number of polygons: 1632 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry water.ply will be applied! Bounding box dimensions for geometry water.ply: Length=0.066238 (100.000%) Width= 0.058313 (100.000%) Depth= 0.217547 (100.000%) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/ethanol.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): whiskey.ply sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Number of vertices: 616 sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Number of polygons: 1228 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry whiskey.ply will be applied! Bounding box dimensions for geometry whiskey.ply: Length=0.082601 (100.000%) Width= 0.076881 (100.000%) Depth= 0.141927 (100.000%) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Cu.txt' (Table_Read_Offset) [Airp_scannerII] Initialize sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' [Airp_scannerII] Initialize sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Loading geometry file (OFF/PLY): wire.ply [Airp_scannerII] Initialize sample_scan: Volume[1], material='book.txt' geometry='book.ply' Number of vertices: 2584 sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Number of polygons: 5438 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry wire.ply will be applied! sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Bounding box dimensions for geometry wire.ply: Length=0.173456 (100.000%) Width= 0.078031 (100.000%) Depth= 0.145752 (100.000%) sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Loading geometry file (OFF/PLY): luggage.off sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Number of vertices: 37707 [Airp_scannerII] Initialize sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' [Airp_scannerII] Initialize sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Number of polygons: 84521 sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry luggage.off will be applied! Bounding box dimensions for geometry luggage.off: Length=0.324186 (100.000%) Width= 0.260044 (100.000%) Depth= 0.540097 (100.000%) sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' [n-62-29-14:04985] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-29-14:04985] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-29-14:04985] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 2.1825 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 2.1825 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 2.08333 [h] % 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 7 6 7 7 7 7 7 7 7 8 8 8 8 8 8 7 8 7 9 8 9 9 9 9 9 9 8 8 10 10 10 10 10 10 9 10 9 9 11 11 11 11 11 11 11 10 10 10 12 12 12 12 12 12 12 11 13 11 13 13 11 13 13 13 13 12 14 14 14 14 14 14 12 14 12 13 15 15 15 15 15 15 15 13 13 14 16 16 16 16 16 16 16 14 14 15 17 17 17 17 17 17 17 15 15 18 16 18 18 18 18 18 18 16 19 16 19 19 19 19 17 19 19 20 20 20 17 20 20 20 17 18 20 21 21 21 21 21 21 18 21 18 19 22 22 22 22 22 22 19 22 19 20 23 23 23 23 23 23 23 20 20 21 24 24 24 24 24 24 24 21 21 22 25 25 25 25 25 25 25 22 22 23 26 26 26 26 26 26 26 23 23 27 24 27 27 27 27 27 27 24 24 28 28 28 28 28 25 28 28 25 25 29 29 29 29 29 29 26 29 26 26 30 30 30 30 30 30 27 30 27 27 31 31 31 31 31 31 31 28 28 28 32 32 32 32 32 32 32 29 29 29 33 33 33 33 33 33 33 30 30 34 30 34 34 34 34 34 34 31 35 31 35 31 35 35 35 35 35 36 32 36 32 32 36 36 36 36 36 37 33 37 33 37 33 37 37 37 37 38 34 38 38 34 38 38 34 38 38 39 39 35 39 35 39 39 39 35 39 40 40 36 40 36 40 40 40 36 40 41 41 37 41 41 37 41 41 41 37 42 42 42 38 42 42 38 42 42 38 43 43 43 43 39 43 39 43 43 44 39 44 44 44 40 44 40 44 44 45 45 40 45 45 45 41 41 45 45 46 46 46 46 41 46 42 46 42 46 47 47 47 47 47 43 42 47 43 47 48 48 48 48 48 44 43 48 44 48 49 49 49 49 49 45 49 45 44 49 50 50 50 50 50 46 50 46 45 50 51 51 51 51 51 51 47 51 47 46 52 52 52 52 52 52 48 52 48 53 47 53 53 53 53 53 49 53 49 54 54 48 54 54 54 54 50 54 50 55 55 55 49 55 55 55 51 55 51 56 56 56 50 56 56 56 52 56 52 57 57 57 57 57 51 57 53 57 53 58 58 58 58 58 52 58 54 58 59 54 59 59 59 59 59 53 55 59 60 60 55 60 60 60 60 54 56 60 61 61 56 61 61 61 61 57 61 62 55 62 57 62 62 62 62 62 58 63 63 56 58 63 63 63 63 63 64 59 64 64 57 59 64 64 64 65 64 60 65 65 60 58 65 65 65 66 61 65 66 66 61 59 66 66 66 67 67 66 62 67 62 67 67 60 67 68 68 67 63 68 63 68 68 61 68 69 69 68 64 69 64 69 69 69 62 70 70 69 70 65 65 70 70 70 71 71 63 70 71 66 66 71 71 71 72 72 71 64 72 67 67 72 72 72 73 73 72 73 65 68 68 73 73 73 74 74 74 73 69 66 74 69 74 74 75 75 75 74 70 67 75 75 70 75 76 76 76 75 71 76 76 68 71 76 77 77 77 76 72 77 77 72 69 77 78 78 78 77 73 78 78 73 78 70 79 79 79 78 74 79 79 74 79 71 80 80 80 79 75 80 80 75 80 72 81 81 81 80 76 81 81 76 81 73 82 82 82 81 77 82 82 82 77 83 74 83 83 82 83 83 78 83 84 78 75 84 84 83 84 84 79 84 85 79 76 85 85 84 85 85 80 85 86 80 77 86 86 85 86 86 81 86 87 81 78 87 87 86 87 87 82 87 88 82 88 79 88 87 88 88 83 88 89 83 89 80 89 88 89 89 84 89 90 84 90 81 90 89 90 90 85 90 91 85 91 82 90 91 91 91 91 86 92 92 86 83 91 92 92 92 92 93 87 93 87 84 92 93 93 93 94 93 88 94 88 93 85 94 94 94 95 94 89 95 89 94 86 95 95 95 96 95 90 96 90 95 87 96 96 96 97 96 91 97 91 96 88 97 97 97 98 97 92 98 92 97 98 89 98 98 99 98 99 93 98 93 99 90 99 99 99 94 99 94 91 95 95 92 96 96 93 97 97 94 98 98 95 99 99 96 97 98 99 *** TRACE end *** Save [Airp_scannerII] Detector: psd0_I=0.00103487 psd0_ERR=1.46354e-07 psd0_N=5e+07 "psd0.dat" Detector: emon_I=0.00103487 emon_ERR=1.46354e-07 emon_N=5e+07 "emon.dat" Detector: psd2_I=0.000643303 psd2_ERR=1.13545e-07 psd2_N=3.82656e+07 "psd2.dat" Finally [Airp_scannerII: 1]. Time: 2.09083 [h] Finally [Airp_scannerII: 1]. Time: 2.09083 [h] Finally [Airp_scannerII: 1]. Time: 2.09083 [h] Finally [Airp_scannerII: 1]. Time: 2.09083 [h] Finally [Airp_scannerII: 1]. Time: 2.09083 [h] Finally [Airp_scannerII: 1]. Time: 2.09083 [h] Finally [Airp_scannerII: 1]. Time: 2.09083 [h] Finally [Airp_scannerII: 1]. Time: 2.09083 [h] Finally [Airp_scannerII: 1]. Time: 2.09083 [h] Detector: psd_far_I=1.17632e-05 psd_far_ERR=1.44371e-08 psd_far_N=1.53234e+06 "psdfar.dat" Finally [Airp_scannerII: 1]. Time: 2.09111 [h] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-07-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr in dataset 1 loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json