INFO: Using directory: "1" INFO: Using existing c-file: ./Airport_scannerII.c INFO: Using existing binary: ./Airport_scannerII.out WARNING: Ignoring invalid parameter: "Airport_scannerII.instr" INFO: === INFO: Using system default number of mpirun -np processes -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: n-62-11-62 Local adapter: mlx5_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: n-62-11-62 Local device: mlx5_0 -------------------------------------------------------------------------- Simulation 'Airp_scannerII' (/zhome/89/0/38697/xTESTS/2022-06-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr): running on 10 nodes (master is 'n-62-11-62', MPI version 3.1). [Airp_scannerII] Initialize Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/book.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): book.ply [Airp_scannerII] Initialize [Airp_scannerII] Initialize Number of vertices: 2853 Number of polygons: 5722 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry book.ply will be applied! Bounding box dimensions for geometry book.ply: Length=0.239599 (100.000%) Width= 0.029804 (100.000%) Depth= 0.164529 (100.000%) sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/h2o2.dat' (Table_Read_Offset) sample_scan: Volume[1], material='book.txt' geometry='book.ply' [Airp_scannerII] Initialize [Airp_scannerII] Initialize sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Loading geometry file (OFF/PLY): h2o2.ply Number of vertices: 406 Number of polygons: 808 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry h2o2.ply will be applied! Bounding box dimensions for geometry h2o2.ply: Length=0.126295 (100.000%) Width= 0.046911 (100.000%) Depth= 0.090087 (100.000%) sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/H2O.txt' (Table_Read_Offset) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Loading geometry file (OFF/PLY): water.ply Number of vertices: 818 [Airp_scannerII] Initialize Number of polygons: 1632 [Airp_scannerII] Initialize [Airp_scannerII] Initialize Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry water.ply will be applied! Bounding box dimensions for geometry water.ply: sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Length=0.066238 (100.000%) Width= 0.058313 (100.000%) Depth= 0.217547 (100.000%) sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/ethanol.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): whiskey.ply Number of vertices: 616 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Number of polygons: 1228 Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry whiskey.ply will be applied! Bounding box dimensions for geometry whiskey.ply: Length=0.082601 (100.000%) Width= 0.076881 (100.000%) Depth= 0.141927 (100.000%) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Cu.txt' (Table_Read_Offset) sample_scan: Volume[1], material='book.txt' geometry='book.ply' Loading geometry file (OFF/PLY): wire.ply sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' Number of vertices: 2584 [Airp_scannerII] Initialize sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' Number of polygons: 5438 sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry wire.ply will be applied! Bounding box dimensions for geometry wire.ply: Length=0.173456 (100.000%) Width= 0.078031 (100.000%) sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' Depth= 0.145752 (100.000%) sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' Opening input file '/zhome/89/0/38697/McXtrace/mcxtrace/3.x-dev/tools/Python/mxrun/../mccodelib/../../../data/Al.txt' (Table_Read_Offset) Loading geometry file (OFF/PLY): luggage.off sample_scan: Volume[1], material='book.txt' geometry='book.ply' Number of vertices: 37707 sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' [Airp_scannerII] Initialize sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[1], material='book.txt' geometry='book.ply' Number of polygons: 84521 sample_scan: Volume[2], material='h2o2.dat' geometry='h2o2.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[3], material='H2O.txt' geometry='water.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[4], material='ethanol.txt' geometry='whiskey.ply' sample_scan: Volume[5], material='Cu.txt' geometry='wire.ply' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' Warning: Neither xwidth, yheight or zdepth are defined. The file-defined (non-scaled) geometry the OFF geometry luggage.off will be applied! Bounding box dimensions for geometry luggage.off: Length=0.324186 (100.000%) Width= 0.260044 (100.000%) Depth= 0.540097 (100.000%) sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' sample_scan: Volume[6], material='Al.txt' geometry='luggage.off' [n-62-11-62:244671] 9 more processes have sent help message help-mpi-btl-openib.txt / ib port not selected [n-62-11-62:244671] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [n-62-11-62:244671] 9 more processes have sent help message help-mpi-btl-openib.txt / error in device init Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.90972 [h] % 0 Trace ETA 1.85167 [h] % 0 Trace ETA 1.85167 [h] % 0 Trace ETA 1.85167 [h] % 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 6 6 6 6 7 7 7 7 7 7 7 7 7 7 8 8 8 8 8 8 8 8 8 8 9 9 9 9 9 9 9 9 9 9 10 10 10 10 10 10 10 10 10 10 11 11 11 11 11 11 11 11 11 11 12 12 12 12 12 12 12 12 12 12 13 13 13 13 13 13 13 13 13 13 14 14 14 14 14 14 14 14 14 14 15 15 15 15 15 15 15 15 15 15 16 16 16 16 16 16 16 16 16 16 17 17 17 17 17 17 17 17 17 17 18 18 18 18 18 18 18 18 18 18 19 19 19 19 19 19 19 19 19 19 20 20 20 20 20 20 20 20 20 20 21 21 21 21 21 21 21 21 21 21 22 22 22 22 22 22 22 22 22 22 23 23 23 23 23 23 23 23 24 23 23 24 24 24 24 24 24 24 25 24 24 25 25 25 25 25 25 25 26 25 26 25 26 26 26 27 26 26 26 26 27 27 26 27 28 27 27 27 27 27 28 28 27 28 28 29 28 28 28 28 29 29 28 29 30 29 29 30 29 29 29 30 29 30 31 30 31 30 30 30 30 31 30 32 31 32 31 31 31 32 31 31 31 33 32 33 32 32 33 32 32 32 32 34 33 34 33 34 33 33 33 33 33 35 35 34 35 34 34 34 34 34 34 36 35 36 35 36 35 35 35 35 35 37 36 37 36 37 36 36 36 36 36 38 38 37 38 37 37 37 37 37 37 39 39 38 39 38 38 38 38 38 38 40 40 39 40 39 39 39 39 39 39 41 41 40 41 40 40 40 40 40 40 42 42 42 41 41 41 41 41 41 41 43 43 43 42 42 42 42 42 42 42 44 44 44 43 43 43 43 43 43 43 45 45 45 44 44 44 44 44 44 44 46 46 46 45 45 45 45 45 45 45 47 47 47 46 46 46 46 46 46 46 48 48 48 47 47 47 47 47 47 47 49 49 49 48 48 48 48 48 48 50 48 50 50 49 49 49 49 49 49 51 49 51 51 50 50 50 50 50 50 50 52 52 52 51 51 51 51 51 53 51 51 53 53 52 52 54 52 52 52 52 52 54 54 53 55 53 53 53 53 53 53 55 55 54 56 54 54 54 54 54 54 56 56 55 57 55 55 55 55 55 55 57 57 56 58 56 56 56 56 56 56 58 58 57 59 57 57 57 57 57 57 59 59 58 60 58 58 58 58 60 58 58 60 61 59 59 59 61 59 59 59 59 61 62 60 60 60 62 60 60 60 60 62 63 61 61 63 61 61 61 61 61 63 64 62 62 64 62 62 62 62 62 64 65 63 63 65 63 63 63 63 63 65 66 64 64 64 66 64 64 64 64 66 67 65 65 67 65 65 65 65 67 65 68 66 68 66 66 66 68 66 66 66 69 67 69 67 67 69 67 67 67 67 70 68 70 68 70 68 68 68 68 68 71 71 69 71 69 69 69 69 69 69 72 72 70 72 70 70 70 70 70 70 73 71 73 71 73 71 71 71 71 71 74 74 72 74 72 72 72 72 72 72 75 75 73 75 73 73 76 73 73 73 73 76 74 76 74 77 74 74 74 74 74 77 77 75 78 75 75 75 75 75 75 78 78 76 79 76 76 76 76 76 76 79 79 77 80 77 77 77 77 77 77 80 80 78 81 78 78 78 78 78 78 81 81 79 82 79 79 79 79 79 79 82 82 83 80 80 80 80 80 80 80 83 83 84 81 81 81 81 81 81 81 84 84 85 82 82 82 82 82 82 82 85 85 83 86 83 83 83 83 83 83 86 86 87 84 84 84 84 84 84 84 87 85 87 88 85 85 85 85 85 85 88 86 88 89 86 86 86 86 86 86 89 87 90 89 87 87 87 87 87 87 90 88 91 90 88 88 88 88 88 88 91 89 92 91 89 89 89 89 89 89 92 90 93 92 90 90 90 90 90 90 93 91 94 93 91 91 91 91 91 91 94 92 95 92 94 92 92 92 92 92 95 93 96 93 95 93 93 93 93 93 94 96 97 94 94 96 94 94 94 94 95 97 95 98 95 95 97 95 95 95 96 96 98 99 96 96 98 96 96 96 97 97 99 97 97 99 97 97 97 98 98 98 98 98 98 98 99 99 99 99 99 99 99 *** TRACE end *** Save [Airp_scannerII] Detector: psd0_I=0.00103487 psd0_ERR=1.46354e-07 psd0_N=5e+07 "psd0.dat" Detector: emon_I=0.00103487 emon_ERR=1.46354e-07 emon_N=5e+07 "emon.dat" Detector: psd2_I=0.000643303 psd2_ERR=1.13545e-07 psd2_N=3.82656e+07 "psd2.dat" Detector: psd_far_I=1.17632e-05 psd_far_ERR=1.44371e-08 psd_far_N=1.53234e+06 "psdfar.dat" Finally [Airp_scannerII: 1]. Time: 1.92389 [h] Finally [Airp_scannerII: 1]. Time: 1.92389 [h] Finally [Airp_scannerII: 1]. Time: 1.92389 [h] Finally [Airp_scannerII: 1]. Time: 1.92389 [h] Finally [Airp_scannerII: 1]. Time: 1.92389 [h] Finally [Airp_scannerII: 1]. Time: 1.92389 [h] Finally [Airp_scannerII: 1]. Time: 1.92389 [h] Finally [Airp_scannerII: 1]. Time: 1.92389 [h] Finally [Airp_scannerII: 1]. Time: 1.92389 [h] Finally [Airp_scannerII: 1]. Time: 1.92389 [h] INFO: Placing instr file copy /zhome/89/0/38697/xTESTS/2022-06-01/McXtrace_CPU_MPICC_KISS_5e7/Airport_scannerII/Airport_scannerII.instr in dataset 1 loading system configuration loading override configuration from /zhome/89/0/38697/mxtest/mctest/../mccodelib/mcxtrace-test/McXtrace_CPU_MPICC_KISS/mccode_config.json